PROJECT INFORMATION
GOLD Project ID
Gp0106921  
Project Name
Enterobacter sacchari MJ18  
Other Names
  
Legacy ER Project ID
79044  
Legacy GOLD ID
Gi0079044  
NCBI BioProject Name Enterobacter sacchari MJ18
NCBI BioProject ID 303241
NCBI BioProject Accession PRJNA303241
NCBI Locus Tag
ATF30  
NCBI BioSample Accession SAMN04487787
PI Laila P. Partida-Martinez
Added By JGI automated process on 2014-10-02
Last Modified By JGI automated process on 2019-09-30
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
The Agave Microbiome: Exploring the role of microbial communities in plant adaptations to desert environments  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX2124877  (Link to NCBI )
Experiment Title Enterobacter sacchari SP1
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ABWZC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study The Agave Microbiome: Exploring the role of microbial communities in plant adaptations to desert environments
Organism Enterobacter sacchari MJ18
Analysis Projects Enterobacter sacchari MJ18
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Library Method (MIGS-28)
Illumina Regular Fragment, 300bp, Plates  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0106921
Organism Name
Enterobacter sacchari MJ18  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Enterobacter  
Genus Synonyms
  
Species
Enterobacter sacchari  
Subspecies
  
Species Synonyms
  
Strain
MJ18  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.24347  
Exemplar Name
Kosakonia sacchari  
Taxon DOI
10.1601/tx.25686  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1235834
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Gammaproteobacteria  
NCBI Order
Enterobacterales  
NCBI Family
Enterobacteriaceae  
NCBI Genus
Kosakonia  
NCBI Species
Kosakonia sacchari  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Non-sporulating  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free-living, endophytic
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms Nitrogen fixation
Phenotypes
  
Energy Sources
  

 

 

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