PROJECT INFORMATION
GOLD Project ID
Gp0103349  
Project Name
Arachis ipaensis K30076  
Other Names
  
Legacy ER Project ID
77551  
Legacy GOLD ID
Gi0077551  
NCBI BioProject Name Arachis ipaensis strain:K30076
NCBI BioProject ID 258025
NCBI BioProject Accession PRJNA258025
NCBI Locus Tag
JP10  
NCBI BioSample Accession SAMN02982874
PI
Added By JGI automated process on 2014-08-22
Last Modified By JGI automated process on 2016-06-13
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center The Peanut Foundation
Iowa State University (USA)
The International Peanut Genome Initiative
Collaborating Institute
  
Funding Agency
  
Project Description
Arachis ipaensis is a wild annual plant native to Bolivia. It is thought to be one of the diploid ancestors of cultivated tetraploid peanut. Arachis ipaensis accession K30076 was sequenced at Beijing Genomics Institute, with funding from The Peanut Foundation, as part of the International Peanut Genome Initiative. The sequencing stragety was whole-genome shotgun, from eight Illumina paired-end sequencing libraries, with insert sizes ranging from 170 bp to 40 kb. The primary contig and scaffold assemblies were constructed using SOAPdenovo (v2.04). Additional scaffolding was conducted using the SSPACE software.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study The International Peanut Genome Initiative
Organism Arachis ipaensis K30076
Analysis Projects Arachis ipaensis K30076
Number of Analysis Projects (AP)
1  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
  
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0103349
Organism Name
Arachis ipaensis K30076  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-STREPTOPHYTA  
Genus
Arachis  
Genus Synonyms
  
Species
Arachis ipaensis  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
K30076  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 130454
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Streptophyta  
NCBI Class
Magnoliopsida  
NCBI Order
Fabales  
NCBI Family
Fabaceae  
NCBI Genus
Arachis  
NCBI Species
Arachis ipaensis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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