PROJECT INFORMATION
GOLD Project ID
Gp0095142  
Project Name
Pleurobrachia bachei  
Other Names
  
Legacy ER Project ID
74276  
Legacy GOLD ID
Gi0074276  
NCBI BioProject Name Pleurobrachia bachei
NCBI BioProject Accession PRJNA213480
NCBI Locus Tag
N471  
NCBI BioSample Accession SAMN00007488
PI Unknown
Added By JGI automated process on 2014-05-30
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center University of Florida (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Sequence the genome of the first Ctenophore.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Nature 510(7503):109-14 The ctenophore genome and the evolutionary origins of neural systems.

SRA Experiment
 
SRA Experiment Id SRX015716  (Link to NCBI )
Experiment Title 5KB paired end library from 20 animals
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name 5KB paired end library
Library Layout PAIRED
Library Instrument 454 GS FLX
PROJECT COMPOSITION
Study Pleurobrachia bachei Genome sequencing
Organism Pleurobrachia bachei
Analysis Projects Pleurobrachia bachei
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) 454
Illumina HiSeq
Illumina GAII
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0095142
Organism Name
Pleurobrachia bachei  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CTENOPHORA  
Genus
Pleurobrachia  
Genus Synonyms
  
Species
Pleurobrachia bachei  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 34499
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Ctenophora  
NCBI Class
Tentaculata  
NCBI Order
Cydippida  
NCBI Family
Pleurobrachiidae  
NCBI Genus
Pleurobrachia  
NCBI Species
Pleurobrachia bachei  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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