PROJECT INFORMATION
GOLD Project ID
Gp0086762  
Project Name
Drosophila melanogaster  
Other Names
  
Legacy ER Project ID
69803  
Legacy GOLD ID
Gi0069803  
NCBI BioProject Name Drosophila melanogaster strain:yw;cn,bw,sp
NCBI BioProject Accession PRJNA235897
NCBI Locus Tag
AQ17  
NCBI BioSample Accession SAMN02588592
PI
Added By JGI automated process on 2014-02-14
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Evolution
Sequencing Center Stanford University (USA)
Illumina (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
TruSeq synthetic long-read data used for de novo assembly of the Drosophila melanogaster genome.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX503698  (Link to NCBI )
Experiment Title Illumina short read data underlying TruSeq synthetic long-reads
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Dmel-pooled-short
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 200
 
SRA Experiment Id SRX447481  (Link to NCBI )
Experiment Title TruSeq synthetic long-reads from D. melanogaster used for de novo assembly
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Dmel-pooled
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 15000
PROJECT COMPOSITION
Study Drosophila melanogaster
Organism Drosophila melanogaster
Analysis Projects Drosophila melanogaster
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0037548
Organism Name
Drosophila melanogaster  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
ARTHROPODA  
Genus
Drosophila  
Genus Synonyms
  
Species
Drosophila melanogaster  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 7227
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Arthropoda  
NCBI Class
Insecta  
NCBI Order
Diptera  
NCBI Family
Drosophilidae  
NCBI Genus
Drosophila  
NCBI Species
Drosophila melanogaster  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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