PROJECT INFORMATION
GOLD Project ID
Gp0047509  
Project Name
Anaeromyces robustus S4  
Other Names
  
Legacy ER Project ID
57900  
Legacy GOLD ID
Gi0057900  
NCBI BioProject Name Anaeromyces robustus S4
NCBI BioProject ID 330692
NCBI BioProject Accession PRJNA330692
NCBI Locus Tag
BCR32  
NCBI BioSample Accession SAMN05421914
PI Michelle O'Malley
Added By JGI automated process on 2013-10-15
Last Modified By JGI automated process on 2018-10-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Transcriptomic Characterization of Anaerobic Gut Fungi  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1973213  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973235  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973212  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973234  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973233  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973232  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973231  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482528  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973230  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482529  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973219  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973218  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973217  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973216  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973215  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973237  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name ANUHX
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1973236  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973214  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482531  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482532  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482530  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973224  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482535  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973223  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482536  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973222  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482533  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973221  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482534  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGC
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973220  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482539  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482537  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482538  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973229  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973228  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973227  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973226  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1973225  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name AAHUG
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482540  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2482541  (Link to NCBI )
Experiment Title Anaeromyces sp S4 Standard Draft
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name BNXGB
Library Layout SINGLE
Library Instrument PAC_BIO_RS
PROJECT COMPOSITION
Study Transcriptomic Characterization of Anaerobic Gut Fungi
Organism Anaeromyces robustus S4
Analysis Projects Anaeromyces robustus S4
Anaeromyces robustus S4
Number of Analysis Projects (AP)
2  
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500-1TB
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
Production RnD, Tubes; Illumina Regular Fragment, 300bp, Tubes  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0047509
Organism Name
Anaeromyces robustus S4  
Other names (alias, synonyms, short names, common names)
Anaeromyces sp. S4  
Organism Domain
EUKARYAL  
Phylogeny
FUNGI-CHYTRIDIOMYCOTA  
Genus
Anaeromyces  
Genus Synonyms
  
Species
Anaeromyces robustus  
Subspecies
  
Species Synonyms
  
Strain
S4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1754192
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Fungi  
NCBI Phylum
Chytridiomycota  
NCBI Class
Neocallimastigomycetes  
NCBI Order
Neocallimastigales  
NCBI Family
Neocallimastigaceae  
NCBI Genus
Anaeromyces  
NCBI Species
Anaeromyces robustus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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