Studies
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56,334 |
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Biosamples
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196,988 |
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Sequencing Projects
|
525,360 |
|
Analysis Projects
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384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0044111
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Project Name
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Legionella fairfieldensis ATCC 49588
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Other Names
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Legacy ER Project ID
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51623
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Legacy GOLD ID
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Gpto31763, Gi0051623
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| NCBI BioProject Name | Legionella fairfieldensis ATCC 49588 | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA223037 |
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NCBI Locus Tag
|
T345
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NCBI BioSample Accession
|
SAMN02743993 |
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Source Sample ID
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| PI | Nikos Kyrpides | ||||||||||||||||||
| Added By | JGI automated process on 2013-07-26 | ||||||||||||||||||
| Last Modified By | JGI automated process on 2022-09-05 | ||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Tree of Life GEBA-KMG |
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
|
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG) project
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| Is JGI Project |
Yes
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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Unrestricted
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JGI Award DOI
|
10.46936/10.25585/60000886 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
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Genome Publications
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Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. PubMed: 28604660 DOI: 10.1038/nbt.3886 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
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| Organism |
Legionella fairfieldensis ATCC 49588 |
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| Analysis Projects |
Legionella fairfieldensis ATCC 49588 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
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Finishing Goal
|
Level 1: Standard Draft |
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Contamination Screening Input
|
|
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DNA Amplification Method
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|
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
|
|
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DNA Amplification Kit
|
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Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500 |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
|
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| GC Percent |
40
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| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0044111 |
| Organism Name |
Legionella fairfieldensis ATCC 49588
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
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| Genus |
Legionella
|
| Genus Synonyms |
|
| Species |
Legionella fairfieldensis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
ATCC 49588
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC 49588
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.2353
|
| Exemplar Name |
Legionella fairfieldensis
|
| Taxon DOI |
10.1601/tx.2353
|
| Biosafety Level |
1
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1408444 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Legionellales
|
| NCBI Family |
Legionellaceae
|
| NCBI Genus |
Legionella
|
| NCBI Species |
Legionella fairfieldensis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
|
| Ecosystem Category |
Wastewater
|
| Ecosystem Type |
Industrial wastewater
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
|
| Gram Staining |
Gram-
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| Biotic Relationships |
|
| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Aquatic Fresh water |
| Metabolisms |
|
| Phenotypes |
|
| Energy Sources |
|
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