PROJECT INFORMATION
GOLD Project ID
Gp0038424  
Project Name
Phytophthora pinifolia  
Other Names
  
Legacy ER Project ID
44852  
Legacy GOLD ID
Gi0044852  
NCBI BioProject Name Phytophthora pinifolia strain:CBS 122922
NCBI BioProject ID 190828
NCBI BioProject Accession PRJNA190828
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02178790
PI
Added By JGI automated process on 2013-04-02
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Canada's Michael Smith Genome Sciences Centre (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX286439
Experiment Title WGS analysis of Normal sample RH_6 (A17552)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name A17552
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX286446
Experiment Title WGS analysis of Normal sample RH_6 (A18306)
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name A18306
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Phytophthora pinifolia Genome sequencing
Organism Phytophthora pinifolia
Analysis Projects Phytophthora pinifolia
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0038424
Organism Name
Phytophthora pinifolia  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PROTISTS-STRAMENOPILES  
Genus
Phytophthora  
Genus Synonyms
  
Species
Phytophthora pinifolia  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 538568
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
  
NCBI Phylum
  
NCBI Class
Oomycetes  
NCBI Order
Peronosporales  
NCBI Family
Peronosporaceae  
NCBI Genus
Phytophthora  
NCBI Species
Phytophthora pinifolia  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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