Studies
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56,335 |
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Biosamples
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196,988 |
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Sequencing Projects
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525,361 |
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Analysis Projects
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384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0023163
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Project Name
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Cronobacter condimenti 1330
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Other Names
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Legacy ER Project ID
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27957
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Legacy GOLD ID
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Gi19971
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| NCBI BioProject Name | Cronobacter condimenti str. 1330 |
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NCBI BioProject Accession
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PRJEB164 |
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NCBI Locus Tag
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BN137
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NCBI BioSample Accession
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SAMEA2272515 |
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Source Sample ID
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| PI | Stephen J Forsythe |
| Added By | JGI automated process on 2012-07-30 |
| Last Modified By | TBK Reddy on 2016-01-21 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Medical |
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Sequencing Center
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Life Technologies
(USA)
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Collaborating Institute
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Trent University
(UK)
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Funding Agency
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Project Description
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Cronobacter are food-borne pathogens associated with serious neonatal diseases, including bacteraemia, meningitis and necrotising enterocolitis. The genus is composed of seven species: C. sakazakii, C. malonaticus, C. turicensis, C. dublinensis, C. muytjensii, C. universalis, and C. condimenti. Clinical cases are associated with three species, C. malonaticus, C. turicensis and, in particular, with C. sakazakii multilocus sequence type 4. Thus, it is plausible that virulence determinants have evolved in certain lineages. Methodology/Principal We generated high quality sequence drafts for eleven Cronobacter genomes representing the seven Cronobacter species, including an ST4 strain of C. sakazakii.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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PloS one: 7(11):e49455 Comparative analysis of genome sequences covering the seven cronobacter species. PubMed: 23166675 DOI: 10.1371/journal.pone.0049455 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Cronobacter condimenti 1330 |
| Organism |
Cronobacter condimenti 1330 |
| Analysis Projects |
Cronobacter condimenti 1330 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
56
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0023163 |
| Organism Name |
Cronobacter condimenti 1330
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
PROTEOBACTERIA-GAMMA
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| Genus |
Cronobacter
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| Genus Synonyms |
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| Species |
Cronobacter condimenti
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| Subspecies |
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| Species Synonyms |
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| Strain |
1330
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
LMG 26250
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| Type Strain |
Yes
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| Exemplar DOI |
10.1601/ex.23105
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| Exemplar Name |
Cronobacter condimenti
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| Taxon DOI |
10.1601/tx.23105
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| Biosafety Level |
2
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
1073999 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Pseudomonadota
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| NCBI Class |
Gammaproteobacteria
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| NCBI Order |
Enterobacterales
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| NCBI Family |
Enterobacteriaceae
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| NCBI Genus |
Cronobacter
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| NCBI Species |
Cronobacter condimenti
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Engineered
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| Ecosystem Category |
Food production
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| Ecosystem Type |
Unclassified
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram-
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
Pathogen |
| Energy Sources |
Heterotroph |
| CYANOBACTERIA METADATA | |
| Filaments |
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| Filament Type |
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| Differentiated Cells |
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| Position Of Heterocysts |
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| Cysts |
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| Mode Of Reproduction |
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| Trichome |
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| Trichome Type |
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| Carotenoids |
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| Pigments |
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| Phage Infectivity |
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| Phage Type |
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| Restriction Enzyme |
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| Toxin Production |
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| Toxin Type |
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| Secondary Metabolites |
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| Developmental Cycle |
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| Branching |
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| Gas Vesicles |
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| Gas Vesicle Type |
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| Diagnostic Inclusion Body Information |
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| Extracellular Structures |
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| Bloom Forming |
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| Pigment Type |
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| Complementary chromatic adaptation (CCA) |
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| Medium Types |
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