PROJECT INFORMATION
GOLD Project ID
Gp0017022  
Project Name
Dunaliella salina CCAP 19/18  
Other Names
  
Legacy ER Project ID
22983  
Legacy GOLD ID
Gi01365, Gi13840  
NCBI BioProject Name Dunaliella salina
NCBI BioProject Accession PRJNA32771
NCBI Locus Tag
DUNSA  
NCBI BioSample Accession SAMN02746051
PI Jon K. Magnuson
Added By JGI automated process on 2012-02-08
Last Modified By JGI automated process on 2022-02-22
Project Comments
  
Project Status
Permanent Draft  
Project Relevance ALGAE
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute Pacific Northwest National Laboratory
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Dunaliella salina is a unicellular, biflagellate green alga belonging to family Clorophyaceae. It lacks a rigid cell wall and contains a single large chloroplast. It is tolerant to high salt concentrations in its environment and accumulates large amounts of carotenoids, including beta-carotene, under certain conditions of high salinity, light intensity or temperature. D. salina has therefore become an important crop for the health food market for the commercial production of natural beta-carotene. Adaptability to increased salt concentration in its environment is due to increased glycerol synthesis by D. salina.  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Unrestricted  
JGI Award DOI 10.46936/10.25585/60001418
JGI Portal Download Raw Sequence Data
Genome Publications Genome announcements Draft Nuclear Genome Sequence of the Halophilic and Beta-Carotene-Accumulating Green Alga Strain CCAP19/18.

Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX1901189  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901180  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901184  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901183  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901182  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901181  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901188  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901187  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901186  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901185  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1950225  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IHOT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX1901179  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1950227  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IHOZ
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX1950226  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name IHOU
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX1901178  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1950228  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name IHPB
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX1901191  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901190  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901173  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name HNAC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX1901172  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name HOPW
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2071061  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name SNNT
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1901171  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name HBNO
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX2071062  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name YCGC
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX1901177  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901176  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name TATN
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1901175  (Link to NCBI )
Experiment Title Dunaliella salina CCAP 19/18 Standard Draft+
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name HAUX
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
PROJECT COMPOSITION
Study Dunaliela salina
Organism Dunaliella salina CCAP 19/18
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal Level 1: Standard Draft
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Illumina HiSeq 2500-Rapid
Illumina HiSeq 2500
Illumina HiSeq 2000
PacBio RS II
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0017022
Organism Name
Dunaliella salina CCAP 19/18  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
PLANTS-CHLOROPHYTA  
Genus
Dunaliella  
Genus Synonyms
  
Species
Dunaliella salina  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
CCAP 19/18  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 3046
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Viridiplantae  
NCBI Phylum
Chlorophyta  
NCBI Class
Chlorophyceae  
NCBI Order
Chlamydomonadales  
NCBI Family
Dunaliellaceae  
NCBI Genus
Dunaliella  
NCBI Species
Dunaliella salina  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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