Studies
|
56,335 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |||||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
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GOLD Project ID
|
Gp0013839
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Project Name
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Legionella cherrii DSM 19213
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Other Names
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Legacy ER Project ID
|
20754
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Legacy GOLD ID
|
Gi11606
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| NCBI BioProject Name | Legionella cherrii DSM 19213 | ||||||||||||||||||
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NCBI BioProject Accession
|
PRJNA222237 |
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NCBI Locus Tag
|
Q775
|
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NCBI BioSample Accession
|
SAMN02743988 |
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Source Sample ID
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| PI | Nikos Kyrpides | ||||||||||||||||||
| Added By | JGI automated process on 2012-01-11 | ||||||||||||||||||
| Last Modified By | JGI automated process on 2023-06-05 | ||||||||||||||||||
| Project Comments |
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Project Status
|
Permanent Draft
|
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Project Relevance
|
Tree of Life GEBA-KMG |
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Sequencing Center
|
DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Leibniz Institute
(Germany)
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
Leibniz Institute (Germany) |
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Project Description
|
|
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| Is JGI Project |
Yes
|
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Project Information Visibility
|
Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
|
JGI Data Utilization Status
|
Unrestricted
|
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JGI Award DOI
|
10.46936/10.25585/60000886 |
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| JGI Portal Download | Raw Sequence Data | ||||||||||||||||||
|
Genome Publications
|
Nature biotechnology: 35(7):676-683 1,003 reference genomes of bacterial and archaeal isolates expand coverage of the tree of life. PubMed: 28604660 DOI: 10.1038/nbt.3886 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Genomic Encyclopedia of Type Strains, Phase I: the one thousand microbial genomes (KMG-I) project |
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| Organism |
Legionella cherrii DSM 19213 |
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| Analysis Projects |
Legionella cherrii DSM 19213 |
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| Number of Analysis Projects (AP) |
1 |
||||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
Level 1: Standard Draft |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina HiSeq 2500 |
|
Library Method
(MIGS-28)
|
|
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Library Layout
|
|
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Library Screening Method
|
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Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
39
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0013839 |
| Organism Name |
Legionella cherrii DSM 19213
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Legionella
|
| Genus Synonyms |
|
| Species |
Legionella cherrii
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
DSM 19213
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
DSM 19213
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.2348
|
| Exemplar Name |
Legionella cherrii
|
| Taxon DOI |
10.1601/tx.2348
|
| Biosafety Level |
2
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
1122160 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Legionellales
|
| NCBI Family |
Legionellaceae
|
| NCBI Genus |
Legionella
|
| NCBI Species |
Legionella cherrii
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
|
| Ecosystem Category |
Aquatic
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
718985 |
| Genbank 16S ID |
XJ3404 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Microaerophilic
|
| Cell Shape |
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
Aquatic |
| Metabolisms |
|
| Phenotypes |
Catalase positive |
| Energy Sources |
|
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