PROJECT INFORMATION
GOLD Project ID
Gp0012805  
Project Name
Fluoribacter dumoffii NY 23, ATCC 33279  
Other Names
  
Legacy ER Project ID
20176  
Legacy GOLD ID
Gi10967  
NCBI BioProject Name Fluoribacter dumoffii NY 23
NCBI BioProject Accession PRJNA74015
NCBI Locus Tag
KYQ  
NCBI BioSample Accession
Source Sample ID
PI Song,Y.J.
Added By Nikos Kyrpides on 2011-12-02
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Beijing Genomics Institute (BGI) (China)
Collaborating Institute Beijing Institute of Microbiology and Epidemiology (China)
Funding Agency
  
Project Description
Fluoribacter dumoffii NY 23 Genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Journal of bacteriology: 194(5):1251-2 Draft genome sequences of two Legionella dumoffii strains, TEX-KL and NY-23.
PubMed: 22328752 DOI: 10.1128/JB.06352-11
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Whole-Genome Sequences of two Legionella dumoffii strains
Organism Fluoribacter dumoffii NY 23, ATCC 33279
Analysis Projects Fluoribacter dumoffii NY 23, ATCC 33279
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 4: Annotation-Directed
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
40  
Chromosome Count
1  
Plasmid Count
2  
ORGANISM NAME
GOLD Organism ID Go0012805
Organism Name
Fluoribacter dumoffii NY 23, ATCC 33279  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Fluoribacter  
Genus Synonyms
  
Species
Fluoribacter dumoffii  
Subspecies
  
Species Synonyms
  
Strain
NY 23, ATCC 33279  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 33279  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2350  
Exemplar Name
Fluoribacter dumoffii  
Taxon DOI
10.1601/tx.9101  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1094715
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
Legionellales  
NCBI Family
Legionellaceae  
NCBI Genus
Fluoribacter  
NCBI Species
Fluoribacter dumoffii  
ISOLATION CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Wastewater  
Ecosystem Type
Industrial wastewater  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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