PROJECT INFORMATION
GOLD Project ID
Gp0012187  
Project Name
Burkholderia sp. BT03  
Other Names
  
Legacy ER Project ID
5997  
Legacy GOLD ID
Gi17041  
NCBI BioProject Name Burkholderia sp. BT03
NCBI BioProject ID 83041
NCBI BioProject Accession PRJNA83041
NCBI Locus Tag
PMI06  
NCBI BioSample Accession SAMN00839617
PI Dale Pelletier
Added By Dale Pelletier on 2011-10-20
Last Modified By Jon Bertsch on 2014-04-09
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Agricultural
Sequencing Center Oak Ridge National Laboratory (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
The Plant-Microbe Interfaces (PMI) project focuses on understanding the dynamic interface that exists between plants, microbes and their environment. A specific focus is on defining the genetic bases of molecular communication between Populus and its microbial consortia. Understanding the inherent chemical and physical processes involved will facilitate natural routes to the cycling and sequestration of carbon in terrestrial environments, ecosystem response to climate change, and the development and management of renewable energy sources  
Is JGI Project
  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications
  
Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX386935
Experiment Title PacBio RS-I data for Burkholdia sp. BT03
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name PacBio
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX135065
Experiment Title Sequencing of Genomes from Pseudomonas and other Diverse Bacteria Isolated from the Rhizosphere and Endosphere of Populus deltoides
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name Burkholderia sp. BT03
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
 
SRA Experiment Id SRX206417
Experiment Title Burkholderia sp. BT03 (454 GS FLX plus )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Layout SINGLE
Library Instrument 454 GS FLX+
PROJECT COMPOSITION
Study Plant-Microbe Interfaces
Organism Burkholderia sp. BT03
Analysis Projects Burkholderia sp. BT03
Number of Analysis Projects 1
Number of DAPs
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
  
Sequencing Comments
  
Sequencing Technology (MIGS-29) Illumina HiSeq 2000
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0012187
Organism Name
Burkholderia sp. BT03  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-BETA  
Genus
Burkholderia  
Genus Synonyms
  
Species
Burkholderia sp. BT03  
Subspecies
  
Species Synonyms
  
Strain
BT03  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1144309
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Proteobacteria  
NCBI Class
Betaproteobacteria  
NCBI Order
Burkholderiales  
NCBI Family
Burkholderiaceae  
NCBI Genus
Burkholderia  
NCBI Species
Burkholderia sp. BT03  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Rhizoplane  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Temperature Optimum
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats Root nodule
Soil
Rhizosphere
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?