PROJECT INFORMATION
GOLD Project ID
Gp0008490  
Project Name
Xanthomonas gardneri PDDCC 1620, ATCC 19865  
Other Names
  
Legacy ER Project ID
18557  
Legacy GOLD ID
Gi08602  
NCBI BioProject Name Xanthomonas gardneri ATCC 19865
NCBI BioProject Accession PRJNA60023
NCBI Locus Tag
XGA  
NCBI BioSample Accession SAMN02471772
Source Sample ID
PI Unknown
Added By Ionna Pagani on 2011-01-12
Last Modified By JGI automated process on 2014-03-26
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Plant Pathogen
Agricultural
Sequencing Center University of Florida, Gainesville (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Xanthomonas gardneri ATCC 19865 genome sequencing project  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications BMC genomics: Comparative genomics reveals diversity among xanthomonads infecting tomato and pepper.
PubMed: 21396108 DOI: 10.1186/1471-2164-12-146
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Xanthomonas gardneri PDDCC 1620, ATCC 19865
Organism Xanthomonas gardneri PDDCC 1620, ATCC 19865
Analysis Projects Xanthomonas gardneri PDDCC 1620, ATCC 19865
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina GAIIx
454
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
64  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0008490
Organism Name
Xanthomonas gardneri PDDCC 1620, ATCC 19865  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Xanthomonas  
Genus Synonyms
  
Species
Xanthomonas perforans  
Subspecies
  
Species Synonyms
  
Strain
PDDCC 1620  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 19865  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.10083  
Exemplar Name
Xanthomonas gardneri  
Taxon DOI
10.1601/tx.10083  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 925777
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
Xanthomonadales  
NCBI Family
Xanthomonadaceae  
NCBI Genus
Xanthomonas  
NCBI Species
Xanthomonas hortorum  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases Blight disease
Known Habitats Plants
Host
Plant root
Metabolisms
  
Phenotypes Pathogen
Energy Sources Heterotroph
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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