PROJECT INFORMATION
GOLD Project ID
Gp0008013  
Project Name
Mus musculus  
Other Names
  
Legacy ER Project ID
17380  
Legacy GOLD ID
Gt0017380, Gc0017380  
NCBI BioProject Name Mus musculus
NCBI BioProject Accession PRJNA20689
NCBI Locus Tag
  
NCBI BioSample Accession
PI
Added By Ionna Pagani on 2010-06-28
Last Modified By Jyothi Mallajosyula on 2014-05-01
Project Comments
  
Project Status
Complete and Published  
Project Relevance Model Organism
Sequencing Center Wellcome Trust Sanger Institute (United Kingdom)
Broad Institute (USA)
Association Nationale de la Recherche et de la Technologie (ANRT) (France)
Collaborating Institute
  
Funding Agency
  
Project Description
The Mouse Sequencing Consortium (MSC) was formed by the National Institutes of Health, the Wellcome Trust, and three private companies (GlaxoSmithKline, Merck Genome Research Institute and Affymetrix, Inc.) to accelerate efforts to sequence the mouse genome.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
Genome Publications PLoS biology 7(5):e1000112 Lineage-specific biology revealed by a finished genome assembly of the mouse.

Other Publications
  
Ignored Publications
  
Unassigned Publications Nucleic acids research 31(18):5349-55 Revisiting the mouse mitochondrial DNA sequence.

Nucleic acids research 25(5):955-64 tRNAscan-SE: a program for improved detection of transfer RNA genes in genomic sequence.

Show more publications...

SRA Experiment
  
PROJECT COMPOSITION
Study Mus musculus
Organism Mus musculus
Analysis Projects Mus musculus
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
21  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0008013
Organism Name
Mus musculus  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Mus  
Genus Synonyms
  
Species
Mus musculus  
Subspecies
  
Species Synonyms
  
Strain
  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 10090
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Mammalia  
NCBI Order
Rodentia  
NCBI Family
Muridae  
NCBI Genus
Mus  
NCBI Species
Mus musculus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases None
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  
CYANOBACTERIA METADATA
Filaments
  
Filament Type
  
Differentiated Cells
  
Position Of Heterocysts
  
Cysts
  
Mode Of Reproduction
  
Trichome
  
Trichome Type
  
Carotenoids
  
Pigments
  
Phage Infectivity
  
Phage Type
  
Restriction Enzyme
  
Toxin Production
  
Toxin Type
  
Secondary Metabolites
  
Developmental Cycle
  
Branching
  
Gas Vesicles
  
Gas Vesicle Type
  
Diagnostic Inclusion Body Information
  
Extracellular Structures
  
Bloom Forming
  
Pigment Type
  
Complementary chromatic adaptation (CCA)
  
Medium Types
  

 

 

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