Studies
|
47,601 |
|
Biosamples
|
123,243 |
|
Sequencing Projects
|
393,308 |
|
Analysis Projects
|
312,581 |
| Organisms | 403,929 |
| PROJECT INFORMATION | |||||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
|
GOLD Project ID
|
Gp0003401
|
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|
Project Name
|
Xanthomonas oryzae pv. oryzae PXO99A
|
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Other Names
|
|
||||||||||||||||
|
Legacy ER Project ID
|
66
|
||||||||||||||||
|
Legacy GOLD ID
|
Gi03042, Gc00778
|
||||||||||||||||
| NCBI BioProject Name | Xanthomonas oryzae pv. oryzae PXO99A | ||||||||||||||||
|
NCBI BioProject ID
|
28127 |
||||||||||||||||
|
NCBI BioProject Accession
|
PRJNA28127 |
||||||||||||||||
|
NCBI Locus Tag
|
PXO
|
||||||||||||||||
|
NCBI BioSample Accession
|
SAMN02603061 |
||||||||||||||||
| PI | Salzberg S | ||||||||||||||||
| Added By |
Nikos Kyrpides
on 2008-03-06 |
||||||||||||||||
| Last Modified By |
Supratim Mukherjee
on 2017-10-18 |
||||||||||||||||
| Project Comments |
|
||||||||||||||||
|
Project Status
|
Complete and Published
|
||||||||||||||||
|
Project Relevance
|
Plant Pathogen Agricultural |
||||||||||||||||
|
Sequencing Center
|
J. Craig Venter Institute (JCVI)
(USA)
|
||||||||||||||||
|
Collaborating Institute
|
University of Maryland
(USA)
|
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|
Funding Agency
|
National Science Foundation (NSF)
(USA)
NIH (USA) U.S. Department of Agriculture (France) |
||||||||||||||||
|
Project Description
|
Representative of race 6
|
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| Is JGI Project |
No
|
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|
Project Information Visibility
|
Public | ||||||||||||||||
| PROJECT TYPE | |||||||||||||||||
|
Specimen
|
Organism |
||||||||||||||||
|
Nucleic Acid
|
DNA |
||||||||||||||||
|
Sequencing Strategy
|
Whole Genome Sequencing
|
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| EXTERNAL PROJECT LINKS | |||||||||||||||||
|
Project Information
|
|
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|
Database
|
|
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|
Genome Publications
|
BMC genomics
9(204):204
Genome sequence and rapid evolution of the rice pathogen Xanthomonas oryzae pv. oryzae PXO99A.
Microb Genom genomes reveals a dynamic structure and complex TAL (transcription activator-like) effector gene relationships. |
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|
Other Publications
|
|
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| SRA Experiment |
|
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| PROJECT COMPOSITION | |||||||||||||||||
| Study |
Xanthomonas oryzae pv. oryzae PXO99A |
||||||||||||||||
| Organism |
Xanthomonas oryzae pv. oryzae PXO99A |
||||||||||||||||
| Analysis Projects |
Xanthomonas oryzae pv. oryzae PXO99A |
||||||||||||||||
| Number of Analysis Projects (AP) |
1 |
||||||||||||||||
| Number of Derived Analyis Projects (DAP) |
0
|
||||||||||||||||
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
Level 6: Finished |
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
|
|
Library Method
(MIGS-28)
|
4.5 Kb, 10 Kb
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
64
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0003401 |
| Organism Name |
Xanthomonas oryzae pv. oryzae PXO99A
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Xanthomonas
|
| Genus Synonyms |
|
| Species |
Xanthomonas oryzae
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
PXO99A
|
| Strain Synonyms |
|
| Serovar/Cultivar |
pv. oryzae
|
| Culture Collection ID |
|
| Type Strain |
Unknown
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
360094 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Proteobacteria
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Xanthomonadales
|
| NCBI Family |
Xanthomonadaceae
|
| NCBI Genus |
Xanthomonas
|
| NCBI Species |
Xanthomonas oryzae
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
Rice blight |
| Known Habitats |
Host |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
|
| CYANOBACTERIA METADATA | |
| Filaments |
|
| Filament Type |
|
| Differentiated Cells |
|
| Position Of Heterocysts |
|
| Cysts |
|
| Mode Of Reproduction |
|
| Trichome |
|
| Trichome Type |
|
| Carotenoids |
|
| Pigments |
|
| Phage Infectivity |
|
| Phage Type |
|
| Restriction Enzyme |
|
| Toxin Production |
|
| Toxin Type |
|
| Secondary Metabolites |
|
| Developmental Cycle |
|
| Branching |
|
| Gas Vesicles |
|
| Gas Vesicle Type |
|
| Diagnostic Inclusion Body Information |
|
| Extracellular Structures |
|
| Bloom Forming |
|
| Pigment Type |
|
| Complementary chromatic adaptation (CCA) |
|
| Medium Types |
|
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