Studies
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56,335 |
|
Biosamples
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196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
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Gp0000715
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Project Name
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Salmonella enterica enterica sv. Typhimurium LT2
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|
Other Names
|
|
|
Legacy ER Project ID
|
10619
|
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Legacy GOLD ID
|
Gc00067
|
| NCBI BioProject Name | Salmonella enterica subsp. enterica serovar Typhimurium str. LT2 |
|
NCBI BioProject Accession
|
PRJNA241 |
|
NCBI Locus Tag
|
STM
|
|
NCBI BioSample Accession
|
SAMN02604315 |
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Source Sample ID
|
|
| PI | McClelland M |
| Added By | Nikos Kyrpides on 2007-11-27 |
| Last Modified By | JGI automated process on 2014-08-18 |
| Project Comments |
|
|
Project Status
|
Complete and Published
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|
Project Relevance
|
Human Pathogen Medical |
|
Sequencing Center
|
Washington University in St. Louis
(USA)
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Collaborating Institute
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|
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Funding Agency
|
NIH
(USA)
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|
Project Description
|
This strain was first isolated in the 1940s by Lilleengen, and typed based on phage sensitivity. It became the principle laboratory strain and many important biochemical and genetic experiments were performed using this strain, including classical phage transduction studies. LT2 contains a plasmid, pSLT, that encodes additional virulence functions. Numerous prophages, some of which contain virulence genes, are inserted into the chromosome of LT2 as compared to related Salmonella
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
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JGI Award DOI
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|
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Genome Publications
|
Nature: Complete genome sequence of Salmonella enterica serovar Typhimurium LT2. PubMed: 11677609 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Salmonella enterica enterica sv Typhimurium LT2 |
| Organism |
Salmonella enterica enterica sv. Typhimurium LT2 |
| Analysis Projects |
Salmonella enterica enterica sv. Typhimurium LT2 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Contamination Screening Input
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|
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DNA Amplification Method
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|
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Single Cell Lysis Protocol
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|
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Single Cell Lysis Approach
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Sequencing Comments
|
|
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DNA Amplification Kit
|
|
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Sequencing Technology
(MIGS-29)
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|
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Library Method
(MIGS-28)
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1.5 kb inserts
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Library Layout
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Library Screening Method
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Number Of Reads
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92648
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Read Size
|
|
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Vector
|
M13
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| GC Percent |
52
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| Chromosome Count |
1
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| Plasmid Count |
1
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000715 |
| Organism Name |
Salmonella enterica enterica sv. Typhimurium LT2
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
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| Genus |
Salmonella
|
| Genus Synonyms |
|
| Species |
Salmonella enterica
|
| Subspecies |
enterica
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| Species Synonyms |
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| Strain |
LT2
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| Strain Synonyms |
|
| Serovar/Cultivar |
Typhimurium
|
| Culture Collection ID |
ATCC 700720
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.3292
|
| Exemplar Name |
Salmonella enterica enterica
|
| Taxon DOI |
10.1601/tx.3292
|
| Biosafety Level |
2
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
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| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
90371 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Enterobacteriaceae
|
| NCBI Genus |
Salmonella
|
| NCBI Species |
Salmonella enterica
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
118393 |
| Genbank 16S ID |
D12814 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Facultative
|
| Cell Shape |
Rod-shaped
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| Motility |
Motile
|
| Sporulation |
Nonsporulating
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| Temperature Range |
Mesophile
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| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
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| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
Singles Pairs |
| Diseases |
Gastroenteritis Salmonellosis Food poisoning |
| Known Habitats |
Soil Host Food Fresh water |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
Chemoorganotroph |
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