Studies
|
56,335 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0000541
|
|
Project Name
|
Legionella pneumophila pneumophila Philadelphia-1
|
|
Other Names
|
|
|
Legacy ER Project ID
|
10467
|
|
Legacy GOLD ID
|
Gc00219
|
| NCBI BioProject Name | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 |
|
NCBI BioProject Accession
|
PRJNA22 |
|
NCBI Locus Tag
|
lpg
|
|
NCBI BioSample Accession
|
SAMN02603156 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | Nikos Kyrpides on 2007-11-27 |
| Last Modified By | JGI automated process on 2014-08-18 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Animal Pathogen Human Pathogen Medical |
|
Sequencing Center
|
Columbia University
(USA)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
National Institute of Allergy and Infectious Diseases
(USA)
|
|
Project Description
|
Aquatic bacterium that causes Legionnaire's disease
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
"Science (New York, N.Y.)": The genomic sequence of the accidental pathogen Legionella pneumophila. PubMed: 15448271 |
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
Proceedings of the National Academy of Sciences of the United States of America: 101(3):841-6 Multiple substrates of the Legionella pneumophila Dot/Icm system identified by interbacterial protein transfer. PubMed: 14715899 Journal of clinical microbiology: 41(5):1819-26 Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping. PubMed: 12734211 Show more publications...
"Science (New York, N.Y.)": 303(5662):1358-61 Legionella effectors that promote nonlytic release from protozoa.
PubMed: 14988561 |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Legionella pneumophila pneumophila Philadelphia-1 |
| Organism |
Legionella pneumophila pneumophila Philadelphia-1 |
| Analysis Projects |
Legionella pneumophila pneumophila Philadelphia-1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Sanger |
|
Library Method
(MIGS-28)
|
whole genome shotgun libraries (2kb inserts) and BAC libraries
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
38129
|
|
Read Size
|
|
|
Vector
|
puC18, pCR4 Blunt?TOPO, lambda phages, M13
|
| GC Percent |
38
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0000541 |
| Organism Name |
Legionella pneumophila pneumophila Philadelphia-1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Legionella
|
| Genus Synonyms |
|
| Species |
Legionella pneumophila
|
| Subspecies |
pneumophila
|
| Species Synonyms |
|
| Strain |
Philadelphia-1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
ATCC 33152
|
| Type Strain |
Yes
|
| Exemplar DOI |
10.1601/ex.2338
|
| Exemplar Name |
Legionella pneumophila pneumophila
|
| Taxon DOI |
10.1601/tx.2338
|
| Biosafety Level |
2
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
272624 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Legionellales
|
| NCBI Family |
Legionellaceae
|
| NCBI Genus |
Legionella
|
| NCBI Species |
Legionella pneumophila
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
108917 |
| Genbank 16S ID |
M59157 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
Aerobe
|
| Cell Shape |
Rod-shaped
|
| Motility |
Motile
|
| Sporulation |
Nonsporulating
|
| Temperature Range |
Mesophile
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships | Free living |
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
Singles |
| Diseases |
Legionellosis |
| Known Habitats |
Soil Host Fresh water Biofilm |
| Metabolisms |
|
| Phenotypes |
Pathogen |
| Energy Sources |
Chemoorganotroph |
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