PROJECT INFORMATION | |
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GOLD Project ID
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Gp0000541
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Project Name
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Legionella pneumophila pneumophila Philadelphia-1
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Other Names
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Legacy ER Project ID
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10467
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Legacy GOLD ID
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Gc00219
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NCBI BioProject Name | Legionella pneumophila subsp. pneumophila str. Philadelphia 1 |
NCBI BioProject Accession
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PRJNA22 |
NCBI Locus Tag
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lpg
|
NCBI BioSample Accession
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SAMN02603156 |
Source Sample ID
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|
PI | Unknown |
Added By | Nikos Kyrpides on 2007-11-27 |
Last Modified By | JGI automated process on 2014-08-18 |
Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Animal Pathogen Human Pathogen Medical |
Sequencing Center
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Columbia University
(USA)
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Collaborating Institute
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|
Funding Agency
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National Institute of Allergy and Infectious Diseases
(USA)
|
Project Description
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Aquatic bacterium that causes Legionnaire's disease
|
Is JGI Project |
No
|
Project Information Visibility
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Public |
PROJECT TYPE | |
Specimen
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Organism |
Nucleic Acid
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DNA |
Sequencing Strategy
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Whole Genome Sequencing
|
EXTERNAL PROJECT LINKS | |
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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"Science (New York, N.Y.)": The genomic sequence of the accidental pathogen Legionella pneumophila. PubMed: 15448271 |
Other Publications
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Ignored Publications
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Unassigned Publications
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Proceedings of the National Academy of Sciences of the United States of America: 101(3):841-6 Multiple substrates of the Legionella pneumophila Dot/Icm system identified by interbacterial protein transfer. PubMed: 14715899 Journal of clinical microbiology: 41(5):1819-26 Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping. PubMed: 12734211 Show more publications...
"Science (New York, N.Y.)": 303(5662):1358-61 Legionella effectors that promote nonlytic release from protozoa.
PubMed: 14988561 |
SRA Experiment |
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PROJECT COMPOSITION | |
Study |
Legionella pneumophila pneumophila Philadelphia-1 |
Organism |
Legionella pneumophila pneumophila Philadelphia-1 |
Analysis Projects |
Legionella pneumophila pneumophila Philadelphia-1 |
Number of Analysis Projects (AP) |
1 |
Number of Derived Analyis Projects (DAP) |
0
|
SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 6: Finished |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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|
Sequencing Technology
(MIGS-29)
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Sanger |
Library Method
(MIGS-28)
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whole genome shotgun libraries (2kb inserts) and BAC libraries
|
Library Layout
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|
Library Screening Method
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Number Of Reads
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38129
|
Read Size
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|
Vector
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puC18, pCR4 Blunt?TOPO, lambda phages, M13
|
GC Percent |
38
|
Chromosome Count |
1
|
Plasmid Count |
0
|
ORGANISM NAME | |
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GOLD Organism ID |
Go0000541 |
Organism Name |
Legionella pneumophila pneumophila Philadelphia-1
|
Other names (alias, synonyms, short names, common names) |
|
Organism Domain |
BACTERIAL
|
Phylogeny |
PROTEOBACTERIA-GAMMA
|
Genus |
Legionella
|
Genus Synonyms |
|
Species |
Legionella pneumophila
|
Subspecies |
pneumophila
|
Species Synonyms |
|
Strain |
Philadelphia-1
|
Strain Synonyms |
|
Serovar/Cultivar |
|
Culture Collection ID |
ATCC 33152
|
Type Strain |
Yes
|
Exemplar DOI |
10.1601/ex.2338
|
Exemplar Name |
Legionella pneumophila pneumophila
|
Taxon DOI |
10.1601/tx.2338
|
Biosafety Level |
2
|
Organism Comments |
|
Cultured |
Yes
|
Culture Type |
Isolate
|
Organism Type |
Natural
|
Uncultured Type |
|
Commercial Strain |
|
Commercial Strain Comments |
|
ORGANISM TAXONOMY
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|
NCBI Taxonomy ID |
272624 |
NCBI Superkingdom |
Bacteria
|
NCBI Kingdom |
|
NCBI Phylum |
Pseudomonadota
|
NCBI Class |
Gammaproteobacteria
|
NCBI Order |
Legionellales
|
NCBI Family |
Legionellaceae
|
NCBI Genus |
Legionella
|
NCBI Species |
Legionella pneumophila
|
ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
|
Ecosystem Category |
Mammals: Human
|
Ecosystem Type |
Unclassified
|
Ecosystem Subtype |
Unclassified
|
Specific Ecosystem |
Unclassified
|
ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
108917 |
Genbank 16S ID |
M59157 |
GENERAL PROPERTIES | |
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Oxygen Requirement |
Aerobe
|
Cell Shape |
Rod-shaped
|
Motility |
Motile
|
Sporulation |
Nonsporulating
|
Temperature Range |
Mesophile
|
Salinity |
|
pH |
|
Cell Diameter |
|
Cell Length |
|
Color |
|
Gram Staining |
Gram-
|
Biotic Relationships | Free living |
Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
Singles |
Diseases |
Legionellosis |
Known Habitats |
Soil Host Fresh water Biofilm |
Metabolisms |
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Phenotypes |
Pathogen |
Energy Sources |
Chemoorganotroph |
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