PROJECT INFORMATION
GOLD Project ID
Gp0000541  
Project Name
Legionella pneumophila pneumophila Philadelphia-1  
Other Names
  
Legacy ER Project ID
10467  
Legacy GOLD ID
Gc00219  
NCBI BioProject Name Legionella pneumophila subsp. pneumophila str. Philadelphia 1
NCBI BioProject Accession PRJNA22
NCBI Locus Tag
lpg  
NCBI BioSample Accession SAMN02603156
Source Sample ID
PI Unknown
Added By Nikos Kyrpides on 2007-11-27
Last Modified By JGI automated process on 2014-08-18
Project Comments
  
Project Status
Complete and Published  
Project Relevance Animal Pathogen
Human Pathogen
Medical
Sequencing Center Columbia University (USA)
Collaborating Institute
  
Funding Agency National Institute of Allergy and Infectious Diseases (USA)
Project Description
Aquatic bacterium that causes Legionnaire's disease  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications "Science (New York, N.Y.)": The genomic sequence of the accidental pathogen Legionella pneumophila.
PubMed: 15448271
Other Publications
  
Ignored Publications
  
Unassigned Publications Proceedings of the National Academy of Sciences of the United States of America: 101(3):841-6 Multiple substrates of the Legionella pneumophila Dot/Icm system identified by interbacterial protein transfer.
PubMed: 14715899
Journal of clinical microbiology: 41(5):1819-26 Characterization of a tandem repeat polymorphism in Legionella pneumophila and its use for genotyping.
PubMed: 12734211
Show more publications...

"Science (New York, N.Y.)": 303(5662):1358-61 Legionella effectors that promote nonlytic release from protozoa.
PubMed: 14988561
SRA Experiment
  
PROJECT COMPOSITION
Study Legionella pneumophila pneumophila Philadelphia-1
Organism Legionella pneumophila pneumophila Philadelphia-1
Analysis Projects Legionella pneumophila pneumophila Philadelphia-1
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
whole genome shotgun libraries (2kb inserts) and BAC libraries  
Library Layout
  
Library Screening Method
  
Number Of Reads
38129  
Read Size
  
Vector
puC18, pCR4 Blunt?TOPO, lambda phages, M13  
GC Percent
38  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000541
Organism Name
Legionella pneumophila pneumophila Philadelphia-1  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Legionella  
Genus Synonyms
  
Species
Legionella pneumophila  
Subspecies
pneumophila  
Species Synonyms
  
Strain
Philadelphia-1  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
ATCC 33152  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.2338  
Exemplar Name
Legionella pneumophila pneumophila  
Taxon DOI
10.1601/tx.2338  
Biosafety Level
2  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 272624
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
Legionellales  
NCBI Family
Legionellaceae  
NCBI Genus
Legionella  
NCBI Species
Legionella pneumophila  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 108917
Genbank 16S ID M59157
GENERAL PROPERTIES
Oxygen Requirement
Aerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Nonsporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram-  
Biotic Relationships Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Diseases Legionellosis
Known Habitats Soil
Host
Fresh water
Biofilm
Metabolisms
  
Phenotypes Pathogen
Energy Sources Chemoorganotroph

 

 

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