PROJECT INFORMATION
GOLD Project ID
Gp0000107  
Project Name
Gallus gallus BN/SsNHsdMCW  
Other Names
  
Legacy ER Project ID
10086  
Legacy GOLD ID
Gc00599, Gi0010086  
NCBI BioProject Name Gallus gallus
NCBI BioProject ID 13342
NCBI BioProject Accession PRJNA13342
NCBI Locus Tag
  
NCBI BioSample Accession SAMN02981218
PI
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2017-03-29
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Washington University in St. Louis (USA)
Wellcome Trust Sanger Institute (United Kingdom)
Collaborating Institute The Roslin Institute (United Kingdom)
Funding Agency NIH (USA)
Project Description
Gallus gallus 12X 454 assembly  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
Project Information
  
Database
  
Genome Publications Nature Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution.

Other Publications
  
SRA Experiment
 
SRA Experiment Id SRX1018645  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib3b
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1022085  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib12
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1016932  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib2
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1016999  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib4
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1021657  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib6
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1021668  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib9
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1022081  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib11
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1014899  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib1
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX2733588  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib13
Library Layout SINGLE
Library Instrument PAC_BIO_RS_II
 
SRA Experiment Id SRX1022166  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib7
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1017995  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name GGAB-256-25426-lib3a
Library Layout SINGLE
Library Instrument PAC_BIO_RS
 
SRA Experiment Id SRX1978954  (Link to NCBI )
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection unspecified
Library Name 2895248698
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2000
Spot Length 202
PROJECT COMPOSITION
Study Gallus gallus BN/SsNHsdMCW
Organism Gallus gallus BN/SsNHsdMCW
Analysis Projects Gallus gallus BN/SsNHsdMCW
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal Level 6: Finished
Contamination Screening Input
  
DNA Amplification Method
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
40  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000107
Organism Name
Gallus gallus BN/SsNHsdMCW  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
EUKARYAL  
Phylogeny
CHORDATA  
Genus
Gallus  
Genus Synonyms
  
Species
Gallus gallus  
Subspecies
  
Species Synonyms
  
Strain
BN/SsNHsdMCW  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
Unknown  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 9031
NCBI Superkingdom
Eukaryota  
NCBI Kingdom
Metazoa  
NCBI Phylum
Chordata  
NCBI Class
Aves  
NCBI Order
Galliformes  
NCBI Family
Phasianidae  
NCBI Genus
Gallus  
NCBI Species
Gallus gallus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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