PROJECT NAME
GOLD Project ID
Gp0000016  
Project Name
Clostridium phytofermentans ISDg  
Other Names
  
Legacy ER Project ID
10003  
Legacy GOLD ID
Gi00162, Gc00682  
NCBI BioProject Name Clostridium phytofermentans ISDg
NCBI BioProject ID 16184
NCBI BioProject Accession
PRJNA16184  
NCBI Locus Tag
Cphy  
NCBI BioSample Accession
SAMN02598360  
PI Susan Leschine
Added By Nikos Kyrpides on 2007-11-27
Last Modified By Supratim Mukherjee on 2015-08-31
Project Comments
  
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
PROJECT INFORMATION
Project Status
Complete and Published  
Project Relevance Biotechnological
Ecological
Energy production
Ethanol production
Hydrogen production
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Soil bacterium that degrades cellulose anaerobically  
Project Information Visibility
Public  
EXTERNAL PROJECT LINKS
JGI Portal Download Raw Sequence Data
Project Information Entrez
Isolation
Taxonomy
Database
  
Genome Publications PloS one 10(6):e0118285 Genome and Transcriptome of Clostridium phytofermentans, Catalyst for the Direct Conversion of Plant Feedstocks to Fuels.
Other Publications
  
Isolation Publications
  
PROJECT COMPOSITION
Studies Clostridium phytofermentans ISDg ATCC 700394
Analysis Projects Clostridium phytofermentans ISDg
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal Level 6: Finished
Sequencing Comments
  
Sequencing Technology (MIGS-29) Sanger
Library Method (MIGS-28)
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
35  
Chromosome Count
1  
Plasmid Count
0  
ORGANISM NAME
GOLD Organism ID Go0000016
Organism Name
Clostridium phytofermentans ISDg  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
FIRMICUTES  
Genus
Clostridium  
Genus Synonyms
  
Species
Clostridium phytofermentans  
Subspecies
  
Species Synonyms
  
Strain
ISDg  
Strain Synonyms
  
Serovar-Biovar
  
Culture Collection ID
ATCC 700394  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3993  
Exemplar Name
Clostridium phytofermentans  
Taxon DOI
10.1601/tx.3993  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 357809
NCBI Kingdom
  
NCBI Phylum
Firmicutes  
NCBI Class
Clostridia  
NCBI Order
Clostridiales  
NCBI Family
Lachnospiraceae  
NCBI Genus
Lachnoclostridium  
NCBI Species
Lachnoclostridium phytofermentans  
ISOLATION CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Forest soil  
ORGANISM EXTERNAL REFERENCES
Strain Info ID 302291
Genbank 16S ID AF020431
Synonym List
  
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Motile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Temperature Optimum
37  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
ID 3
Term Free living
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Pairs
Singles
Diseases None
Known Habitats Soil
Terrestrial
Metabolisms Acetate producer
Cellulose degrader
Ethanol production
Phenotypes
  
Energy Sources Chemoorganotroph

 

 

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