PROJECT INFORMATION
GOLD Project ID
Gp0741410  
Project Name
Pelagic ocean water microbial communities from the Pacific Ocean - 1903c117_50m-3  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Comparison of long- and short-read sequencing technology for marine shotgun metagenome quality
NCBI BioProject Accession PRJNA853328
NCBI Locus Tag
  
NCBI BioSample Accession SAMN29384513
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-05-24
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center National Oceanic and Atmospheric Administration (NOAA) (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Pelagic ocean water microbial communities from the Pacific Ocean  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX15931858  (Link to NCBI )
Experiment Title Marine metagenome long vs short read sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection size fractionation
Library Name 1903c117_50m-3
Library Layout SINGLE
Library Instrument SEQUEL_II
PROJECT COMPOSITION
Study Seawater microbial communities from North Pacific Ocean, California, USA
Biosample Pelagic ocean water microbial communities from the Pacific Ocean - 1903c117_50m-3
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Pelagic ocean water microbial communities from the Pacific Ocean - 1903c117_50m-3
Other Names (alias, synonyms, short names)
  
Sample Description
Pelagic ocean water microbial communities from the Pacific Ocean  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408172
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Pelagic zone  
Specific Ecosystem
  

 

 

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