PROJECT INFORMATION
GOLD Project ID
Gp0741403  
Project Name
Metatranscriptome of marine microbial communities from surface seawater during spring phytoplankton bloom in Hegoland, North Sea - 2020-05-08_0.2μm  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metagenomic sequencing of surface seawater samples collected during the spring phytoplankton bloom at Helgoland in the year 2020
NCBI BioProject Accession PRJEB52999
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA14431138
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-05-24
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center Max Planck Institute for Marine Microbiology (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of marine microbial communities from surface seawater during spring phytoplankton bloom in Hegoland, North Sea  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX9317454  (Link to NCBI )
Experiment Title Illumina HiSeq 3000 paired end sequencing
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection unspecified
Library Name 4775_S
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
PROJECT COMPOSITION
Study Marine microbial communities from surface seawater during spring phytoplankton bloom in Hegoland, North Sea
Biosample Marine microbial communities from surface seawater during spring phytoplankton bloom in Hegoland, North Sea - 2020-05-08_0.2μm
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Marine microbial communities from surface seawater during spring phytoplankton bloom in Hegoland, North Sea - 2020-05-08_0.2μm
Other Names (alias, synonyms, short names)
  
Sample Description
Marine microbial communities from surface seawater during spring phytoplankton bloom in Hegoland, North Sea  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408172
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Oceanic  
Specific Ecosystem
Photic zone  
EXPERIMENT
Experimental Conditions
  

 

 

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