Studies
|
56,334 |
|
Biosamples
|
196,920 |
|
Sequencing Projects
|
525,292 |
|
Analysis Projects
|
385,429 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0740533
|
|
Project Name
|
Proteus mirabilis Roy1
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | Proteus mirabilis strain:Roy1 Genome sequencing and assembly |
|
NCBI BioProject Accession
|
PRJNA916914 |
|
NCBI Locus Tag
|
PAK28
|
|
NCBI BioSample Accession
|
SAMN32513256 |
|
Source Sample ID
|
|
| PI | Vipaporn Phuntumart |
| Added By | Sayantan Roy Choudhury on 2023-05-22 |
| Last Modified By | Galina Ovchinnikova on 2023-05-26 |
| Project Comments |
|
|
Project Status
|
Permanent Draft
|
|
Project Relevance
|
Rat Pathogen Medical |
|
Sequencing Center
|
Genewiz Inc.
(USA)
Bowling Green State University (USA) |
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
A comparative genomic study to investigate the unique traits of a novel Proteus mirabilis strain isolated from the gut of MDMA treated rats
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Proteus mirabilis Roy1 |
| Organism |
Proteus mirabilis Roy1 |
| Analysis Projects |
Proteus mirabilis Roy1 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 1: Standard Draft |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
Chemical
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
Illumina MiSeq |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
Paired
|
|
Library Screening Method
|
|
|
Number Of Reads
|
3,507,742
|
|
Read Size
|
150bp
|
|
Vector
|
|
| GC Percent |
38.86
|
| Chromosome Count |
1
|
| Plasmid Count |
0
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0667199 |
| Organism Name |
Proteus mirabilis Roy1
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PSEUDOMONADOTA
|
| Genus |
Proteus
|
| Genus Synonyms |
|
| Species |
Proteus mirabilis
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Roy1
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
584 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Morganellaceae
|
| NCBI Genus |
Proteus
|
| NCBI Species |
Proteus mirabilis
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals
|
| Ecosystem Type |
Digestive system
|
| Ecosystem Subtype |
Large intestine
|
| Specific Ecosystem |
Cecum
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
Rod-shaped
|
| Motility |
|
| Sporulation |
|
| Temperature Range |
|
| Salinity |
|
| pH |
|
| Cell Diameter |
|
| Cell Length |
|
| Color |
|
| Gram Staining |
Gram-
|
| Biotic Relationships |
|
| Symbiotic Physical Interaction |
|
| Symbiotic Relationship |
|
| Symbiont Name |
|
| Symbiont Taxon ID |
|
| Cell Arrangements |
|
| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
Commensal Enteropathogenic |
| Energy Sources |
|
You are going to add the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
You are going to remove permissions for the following user to your project, biosample and study.
Contact Name/Email: Do you want to continue?
Changing the SP visibility will also change visibility on the following items:
Do you want to continue with this visibility change?
Checking that this Sequencing Project can be made private:
Do you want to continue with this visibility change?
Changing the SP Sequencing Strategy will also effect these items:
Do you want to continue with this Sequencing Strategy change?
