Studies
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56,335 |
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Biosamples
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196,965 |
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Sequencing Projects
|
525,335 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,219 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0739644
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Project Name
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Populus tremuloides POTR-UINTA-8-194A Resequencing
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name |
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NCBI BioProject Accession
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NCBI Locus Tag
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NCBI BioSample Accession
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Source Sample ID
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| PI | Benjamin Blonder |
| Added By | JGI automated process on 2023-05-17 |
| Last Modified By | JGI automated process on 2023-05-17 |
| Project Comments |
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Project Status
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incomplete
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Project Relevance
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Sequencing Center
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DOE Joint Genome Institute (JGI)
(USA)
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Collaborating Institute
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Funding Agency
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U.S. Department of Energy (DOE)
(USA)
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Project Description
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Populus tremuloides resequencing to identify the genetic basis of complex phenotypes and climate adaptation; sample from leaves dried on silica gel beads
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| Is JGI Project |
Yes
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Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Resequencing
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| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
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Restricted
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JGI Award DOI
|
10.46936/10.25585/60008616 |
| JGI Portal Download | Raw Sequence Data |
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Identifying the genetic basis of complex phenotypes and climate adaptation in quaking aspen (Populus tremuloides) |
| Organism |
Populus tremuloides POTR-UINTA-8-194A |
| Analysis Projects |
|
| Number of Analysis Projects (AP) |
0 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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In progress |
| Sequencing Quality (MIGS-31) |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina NovaSeq S4 |
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Library Method
(MIGS-28)
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Illumina Nextera with Size Selection, Plates
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
33
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0667054 |
| Organism Name |
Populus tremuloides POTR-UINTA-8-194A
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
EUKARYAL
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| Phylogeny |
PLANTS-STREPTOPHYTA
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| Genus |
Populus
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| Genus Synonyms |
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| Species |
Populus tremuloides
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| Subspecies |
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| Species Synonyms |
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| Strain |
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| Strain Synonyms |
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| Serovar/Cultivar |
POTR-UINTA-8-194A
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
3693 |
| NCBI Superkingdom |
Eukaryota
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| NCBI Kingdom |
Viridiplantae
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| NCBI Phylum |
Streptophyta
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| NCBI Class |
Magnoliopsida
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| NCBI Order |
Malpighiales
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| NCBI Family |
Salicaceae
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| NCBI Genus |
Populus
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| NCBI Species |
Populus tremuloides
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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