Studies
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56,334 |
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Biosamples
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196,920 |
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Sequencing Projects
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525,292 |
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Analysis Projects
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385,429 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0739333
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Project Name
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Campylobacter jejuni A9a
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Campylobacter jejuni strains associated with different diarrheal outcomes | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA641382 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN15351901 |
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Source Sample ID
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| PI | Kerry Cooper | ||||||||||||||||||
| Added By | Van Handke on 2023-05-13 | ||||||||||||||||||
| Last Modified By | Supratim Mukherjee on 2023-05-25 | ||||||||||||||||||
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Sequencing Center
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University of Arizona
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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Campylobacter jejuni is the leading cause of bacterial gastroenteritis in the world, and is associated with two different diarrheal outcomes in patients. These strains represent different known diarrheal outcomes in patients and in the neonatal piglet model, and were used for comparative genomics to better understand the pathogenesis of the different diarrheal outcomes of Campylobacter jejuni.
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Campylobacter jejuni strains associated with different diarrheal outcomes |
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| Organism |
Campylobacter jejuni A9a |
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| Analysis Projects |
Campylobacter jejuni A9a |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
30.4
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
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| GOLD Organism ID |
Go0666917 |
| Organism Name |
Campylobacter jejuni A9a
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
CAMPYLOBACTEROTA
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| Genus |
Campylobacter
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| Genus Synonyms |
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| Species |
Campylobacter jejuni
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| Subspecies |
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| Species Synonyms |
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| Strain |
A9a
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
197 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Campylobacterota
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| NCBI Class |
Epsilonproteobacteria
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| NCBI Order |
Campylobacterales
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| NCBI Family |
Campylobacteraceae
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| NCBI Genus |
Campylobacter
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| NCBI Species |
Campylobacter jejuni
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
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| Ecosystem Category |
Birds
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| Ecosystem Type |
Digestive system
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| Ecosystem Subtype |
Ceca
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
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| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
Animal feces |
| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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