Studies
|
56,335 |
|
Biosamples
|
196,965 |
|
Sequencing Projects
|
525,335 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,219 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0733825
|
|
Project Name
|
Escherichia coli 2017.11.01CC
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | The purpose of the study is to investigate the antimicrobial-resistant bacteria in food, livestock-, and human-feces samples using genetic analysis for clarifying the dissemination of resistant bacteria in a community. |
|
NCBI BioProject Accession
|
PRJDB8858 |
|
NCBI Locus Tag
|
LPH31
|
|
NCBI BioSample Accession
|
SAMD00407183 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2023-03-30 |
| Last Modified By | |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
|
|
Sequencing Center
|
Osaka Institute of Public Health
(Japan)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Escherichia coli 2017.11.01CC genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
Infect Drug Resist: Isolates from the Same Household. PubMed: 33688219 DOI: 10.2147/IDR.S298120 mSphere: in Healthy Residents in Vietnam. PubMed: 32132160 DOI: 10.1128/mSphere.00117-20 |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Genome sequence analysis of antimicrobial-resistant bacteria |
| Organism |
Escherichia coli 2017.11.01CC |
| Analysis Projects |
Escherichia coli 2017.11.01CC |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
In progress |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
MGI DNBSEQ-G400RS |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
50.6
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0666146 |
| Organism Name |
Escherichia coli 2017.11.01CC
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
PROTEOBACTERIA-GAMMA
|
| Genus |
Escherichia
|
| Genus Synonyms |
|
| Species |
Escherichia coli
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
2017.11.01CC
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
562 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Pseudomonadota
|
| NCBI Class |
Gammaproteobacteria
|
| NCBI Order |
Enterobacterales
|
| NCBI Family |
Enterobacteriaceae
|
| NCBI Genus |
Escherichia
|
| NCBI Species |
Escherichia coli
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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