Studies
|
56,335 |
|
Biosamples
|
196,988 |
|
Sequencing Projects
|
525,361 |
|
Analysis Projects
|
384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0733477
|
|
Project Name
|
Leptospira kirschneri FMAS_PN5
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | This is a collaborative project to culture, isolation and genomic analysis of Sri Lankan Leptospira isolates |
|
NCBI BioProject Accession
|
PRJNA528695 |
|
NCBI Locus Tag
|
FH602
|
|
NCBI BioSample Accession
|
SAMN11919596 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2023-03-30 |
| Last Modified By | |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Medical |
|
Sequencing Center
|
Rajarata University of Sri lanka
(Sri Lanka)
|
|
Collaborating Institute
|
|
|
Funding Agency
|
|
|
Project Description
|
Leptospira kirschneri FMAS_PN5 genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
|
|
Other Publications
|
|
|
Ignored Publications
|
|
|
Unassigned Publications
|
J Genomics: Strains FMAS_KW1, FMAS_KW2 and FMAS_AW1 Isolated from Leptospirosis Patients from Karawanalla and Awissawella, Sri Lanka. PubMed: 32494307 DOI: 10.7150/jgen.43953 |
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Sri Lankan Leptospira Genome sequencing |
| Organism |
Leptospira kirschneri FMAS_PN5 |
| Analysis Projects |
Leptospira kirschneri FMAS_PN5 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
In progress |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
|
Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
|
Sequencing Technology
(MIGS-29)
|
PacBio Sequel System |
|
Library Method
(MIGS-28)
|
|
|
Library Layout
|
|
|
Library Screening Method
|
|
|
Number Of Reads
|
|
|
Read Size
|
|
|
Vector
|
|
| GC Percent |
36.3
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0665798 |
| Organism Name |
Leptospira kirschneri FMAS_PN5
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
SPIROCHAETOTA
|
| Genus |
Leptospira
|
| Genus Synonyms |
|
| Species |
Leptospira kirschneri
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
FMAS_PN5
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
|
| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
29507 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Spirochaetota
|
| NCBI Class |
Spirochaetia
|
| NCBI Order |
Leptospirales
|
| NCBI Family |
Leptospiraceae
|
| NCBI Genus |
Leptospira
|
| NCBI Species |
Leptospira kirschneri
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Mammals: Human
|
| Ecosystem Type |
Circulatory system
|
| Ecosystem Subtype |
Blood
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
|
| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
|
| Known Habitats |
|
| Metabolisms |
|
| Phenotypes |
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| Energy Sources |
|
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