PROJECT INFORMATION
GOLD Project ID
Gp0733069  
Project Name
Staphylococcus chromogenes IVB6199  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Members of the Staphylococcaceae family, and particularly of the genus Staphylococcus, encompass important human and animal pathogens and especially human-derived strains are well-studied for virulence, pathogenicity as well as for drug resistance. Livestock-derived strains, especially from low-and-middle-income countries, are studied to a much lesser extent. This dataset of complete genomes from East African Camel-Associated Staphylococcaceae spp. provides new insight in the virulome and resistome across multiple species and increases the number of available strains for some poorly described species (S.muscae, S.delphini etc).
NCBI BioProject Accession PRJNA819273
NCBI Locus Tag
MUA20  
NCBI BioSample Accession SAMN26923350
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-03-30
Last Modified By
Project Comments
  
Project Status
Complete and Published  
Project Relevance Agricultural
Sequencing Center University of Berne (Switzerland)
Collaborating Institute
  
Funding Agency
  
Project Description
Staphylococcus chromogenes IVB6199 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Applied and environmental microbiology: 88(21):e0114622 from the Horn of Africa.
PubMed: 36226992 DOI: 10.1128/aem.01146-22
SRA Experiment
 
SRA Experiment Id SRX15572439  (Link to NCBI )
Experiment Title PacBio Sequel sequencing of camel Staphylococcaceae from the Horn of Africa
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name S_chromogenes_IVB6199
Library Layout SINGLE
Library Instrument SEQUEL
PROJECT COMPOSITION
Study Comparative Genomics of East African Camel-Associated Staphylococcaceae spp.
Organism Staphylococcus chromogenes IVB6199
Analysis Projects Staphylococcus chromogenes IVB6199
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio Sequel
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
36.8  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0665390
Organism Name
Staphylococcus chromogenes IVB6199  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACILLOTA  
Genus
Staphylococcus  
Genus Synonyms
  
Species
Staphylococcus chromogenes  
Subspecies
  
Species Synonyms
  
Strain
IVB6199  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 46126
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacillota  
NCBI Class
Bacilli  
NCBI Order
Bacillales  
NCBI Family
Staphylococcaceae  
NCBI Genus
Staphylococcus  
NCBI Species
Staphylococcus chromogenes  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Integumentary system  
Ecosystem Subtype
Mammary gland  
Specific Ecosystem
Milk  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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