PROJECT INFORMATION
GOLD Project ID
Gp0730313  
Project Name
Soil microbial communities from experimental field in Blacksburg, Virginia, USA - SPI-R1-SA-AR1-3 (Day 1)  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Soil and runoff Metagenome
NCBI BioProject Accession PRJNA636365
NCBI Locus Tag
  
NCBI BioSample Accession SAMN15082901
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-03-29
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center Virginia Tech, Blacksburg, USA (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Soil microbial communities from experimental field in Blacksburg, Virginia, USA; soil with surface applied manure after rainfall, day 1  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX8513852  (Link to NCBI )
Experiment Title After rainfall manure 1 day surface applied soil metagenome
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection PCR
Library Name SPI-R1-SA-AR1-3 (Day 1)
Library Layout PAIRED
Library Instrument ILLUMINA_NOVA_SEQ_6000
PROJECT COMPOSITION
Study Soil and runoff microbial communities from experimental field in Blacksburg, Virginia, USA
Biosample Soil microbial communities from experimental field in Blacksburg, Virginia, USA - SPI-R1-SA-AR1-3 (Day 1)
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Soil microbial communities from experimental field in Blacksburg, Virginia, USA - SPI-R1-SA-AR1-3 (Day 1)
Other Names (alias, synonyms, short names)
  
Sample Description
Soil microbial communities from experimental field in Blacksburg, Virginia, USA; soil with surface applied manure after rainfall, day 1  
SAMPLE TAXONOMY
NCBI Taxonomy ID 410658
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Terrestrial  
Ecosystem Type
Soil  
Ecosystem Subtype
Agricultural land  
Specific Ecosystem
  

 

 

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