PROJECT INFORMATION
GOLD Project ID
Gp0724277  
Project Name
Human saliva microbial communities from a periodontitis subject in Manaus, Brazil - OPS0025  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Human salivary metagenome in health and disease
NCBI BioProject Accession PRJNA717815
NCBI Locus Tag
  
NCBI BioSample Accession SAMN18515005
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-03-20
Last Modified By
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center Amazonas State University
Collaborating Institute
  
Funding Agency
  
Project Description
Human saliva microbial communities from a periodontitis subject in Manaus, Brazil  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX10493073  (Link to NCBI )
Experiment Title Random DNA sequencing of human salivary metagenome in periodontitis
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name OPS0025 Hiseq paired
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
PROJECT COMPOSITION
Study Human saliva microbial communities from a healthy and a periodontiti individuals in Manaus, Brazil
Biosample Human saliva microbial communities from a periodontitis subject in Manaus, Brazil - OPS0025
Analysis Projects Human saliva microbial communities from a periodontitis subject in Manaus, Brazil - OPS0025
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 4000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Human saliva microbial communities from a periodontitis subject in Manaus, Brazil - OPS0025
Other Names (alias, synonyms, short names)
  
Sample Description
Human saliva microbial communities from a periodontitis subject in Manaus, Brazil  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1679718
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals: Human  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Oral cavity  
Specific Ecosystem
Saliva  

 

 

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