Studies
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56,329 |
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Biosamples
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196,776 |
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Sequencing Projects
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525,145 |
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Analysis Projects
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385,405 |
| Organisms | 484,215 |
| PROJECT INFORMATION | |
|---|---|
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GOLD Project ID
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Gp0723393
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Project Name
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Thermobifida alba DSM 43795
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Thermobifida alba strain:DSM 43795T |
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NCBI BioProject Accession
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PRJNA554762 |
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NCBI Locus Tag
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NCBI BioSample Accession
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SAMN14604141 |
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Source Sample ID
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| PI | Balazs Horvath |
| Added By | Margot Otto on 2023-03-16 |
| Last Modified By | Galina Ovchinnikova on 2023-03-23 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Seqomics Ltd
(Hungary)
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Collaborating Institute
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Funding Agency
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Project Description
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Whole genome sequencing and annotation of the thermotolerant cellulose degrader Gram-positive strain Actinobifida alba was isolated from Italian soil in 1967. Later this strain was reclassified in 1998 by Zhang et. al as Thermobifida alba DSM 43795T as the type species of the newly formed genus Thermobifida.
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| Is JGI Project |
No
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Project Information Visibility
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Public |
| PROJECT TYPE | |
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Thermobifida alba DSM 43795 |
| Organism |
Thermobifida alba DSM 43795 |
| Analysis Projects |
Thermobifida alba DSM 43795 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
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Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Illumina MiSeq PacBio Sequel |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0113625 |
| Organism Name |
Thermobifida alba DSM 43795
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
ACTINOMYCETOTA
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| Genus |
Thermobifida
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| Genus Synonyms |
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| Species |
Thermobifida alba
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| Subspecies |
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| Species Synonyms |
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| Strain |
DSM 43795
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
DSM 43795
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| Type Strain |
Yes
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
53522 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Actinomycetota
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| NCBI Class |
Actinomycetes
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| NCBI Order |
Streptosporangiales
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| NCBI Family |
Nocardiopsaceae
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| NCBI Genus |
Thermobifida
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| NCBI Species |
Thermobifida alba
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
Environmental
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| Ecosystem Category |
Terrestrial
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| Ecosystem Type |
Soil
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| Ecosystem Subtype |
Unclassified
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| Specific Ecosystem |
Unclassified
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
AF002260 |
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
Mesophile
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
Gram+
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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