PROJECT INFORMATION
GOLD Project ID
Gp0722756  
Project Name
Root microbial communities from Sorghum plant in Scottsbluff, Nebraska, USA - SB0627D-E14-080116_2639 iTags  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Systems Analysis of the Physiological and Molecular Mechanisms of Sorghum Nitrogen Use Efficiency, Water Use Efficiency and Interactions with the Soil Microbiome.
NCBI BioProject Accession PRJNA945936
NCBI Locus Tag
  
NCBI BioSample Accession SAMN33816730
Source Sample ID
PI Daniel Schachtman
Added By JGI automated process on 2023-03-14
Last Modified By JGI automated process on 2023-03-19
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center DOE Joint Genome Institute (JGI) (USA)
Collaborating Institute
  
Funding Agency U.S. Department of Energy (DOE) (USA)
Project Description
Root microbial communities from Sorghum bicolor plant variety Energy genotype Grassl grown under Water Stressed conditions  
Is JGI Project
Yes  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Targeted Gene Survey  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
Restricted  
JGI Award DOI 10.46936/10.25585/60001066
JGI Portal Download Raw Sequence Data
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Sorghum-associated microbial communities from plants grown in Nebraska, USA
Biosample Root microbial communities from Sorghum plant in Scottsbluff, Nebraska, USA - SB0627D-E14-080116_2639 iTags
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Root microbial communities from Sorghum plant in Scottsbluff, Nebraska, USA - SB0627D-E14-080116_2639 iTags
Other Names (alias, synonyms, short names)
  
Sample Description
Root microbial communities from Sorghum bicolor plant variety Energy genotype Grassl grown under Water Stressed conditions  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1118232
GOLD CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Plants  
Ecosystem Type
Roots  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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