PROJECT INFORMATION
GOLD Project ID
Gp0704781  
Project Name
Surface microbial communities from International Space Station, USA module - IIIF5SW  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name
  
NCBI BioProject Accession PRJNA438545
NCBI Locus Tag
  
NCBI BioSample Accession SAMN05581718
Source Sample ID
PI Pratyay Sengupta
Added By Pratyay Sengupta on 2023-02-03
Last Modified By Supratim Mukherjee on 2023-02-08
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Jet Propulsion Laboratory, California Institute of Technology
Collaborating Institute
  
Funding Agency
  
Project Description
Surface microbial communities from International Space Station, USA modul; Flight 3, location 5: The front panel of the Overhead-4- Zero-G Stowage Rack (ZSR). The white fabric surface material is based on Nomex.  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Microbiome: 7(1):50 Characterization of the total and viable bacterial and fungal communities associated with the International Space Station surfaces.
PubMed: 30955503 DOI: 10.1186/s40168-019-0666-x
Microbiome: 6(1):204 Succession and persistence of microbial communities and antimicrobial resistance genes associated with International Space Station environmental surfaces.
PubMed: 30424821 DOI: 10.1186/s40168-018-0585-2
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX3808510  (Link to NCBI )
Experiment Title Metagenome
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection RANDOM
Library Name IIIF5SW
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
 
SRA Experiment Id SRX3244862  (Link to NCBI )
Experiment Title Microbial diversity
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection PCR
Library Name ISS3-5
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
 
SRA Experiment Id SRX3808507  (Link to NCBI )
Experiment Title Metagenome
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection RANDOM
Library Name IIIF5SWP
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
 
SRA Experiment Id SRX3244869  (Link to NCBI )
Experiment Title Microbial diversity
Exp Library Strategy AMPLICON
Library Source METAGENOMIC
Library Selection PCR
Library Name ISS3-5_P
Library Layout SINGLE
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Surface microbial communities from International Space Station, USA module
Biosample Surface microbial communities from International Space Station, USA module - IIIF5SW
Analysis Projects Surface microbial communities from International Space Station, USA module - IIIF5SW PMA-treated
Surface microbial communities from International Space Station, USA module - IIIF5SW no PMA treatment
Number of Analysis Projects (AP) 2
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 1: Standard Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq 4000
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Surface microbial communities from International Space Station, USA module - IIIF5SW
Other Names (alias, synonyms, short names)
  
Sample Description
Surface microbial communities from International Space Station, USA modul; Flight 3, location 5: The front panel of the Overhead-4- Zero-G Stowage Rack (ZSR). The white fabric surface material is based on Nomex.  
SAMPLE TAXONOMY
NCBI Taxonomy ID 1256227
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Built environment  
Ecosystem Type
International Space Station  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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