PROJECT INFORMATION | |||||||||||||||||
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GOLD Project ID
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Gp0704443
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Project Name
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Raoultella planticola 4928STDY7071414
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Other Names
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Legacy GOLD ID
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NCBI BioProject Name | The study investigates how early microbe exposure and the developing immune system influence subsequent health and developmental outcomes. Culturing efforts coupled with whole genome sequencing of the gastrointestinal bacteria can address key questions that are computationally non-trivial using shotgun metagenomics alone. This comprehensive gut microbiota-derived bacterial genome collection provides the basis to improve the taxonomic classification resolution of metagenomic analysis, and to allow subsequent in vitro and in vivo experiments on host physiology and gut colonisation process. | ||||||||||||||||
NCBI BioProject Accession
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PRJEB22252 |
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NCBI Locus Tag
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FN108
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NCBI BioSample Accession
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SAMEA5614292 |
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Source Sample ID
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PI | Unknown | ||||||||||||||||
Added By | JGI automated process on 2023-01-20 | ||||||||||||||||
Last Modified By | Supratim Mukherjee on 2023-02-11 | ||||||||||||||||
Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Wellcome Trust Sanger Institute
(United Kingdom)
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Collaborating Institute
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Funding Agency
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Project Description
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Raoultella planticola 4928STDY7071414 genome sequencing
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Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||
PROJECT TYPE | |||||||||||||||||
Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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EXTERNAL PROJECT LINKS | |||||||||||||||||
JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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SRA Experiment |
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PROJECT COMPOSITION | |||||||||||||||||
Study |
Genome sequencing of gastrointestitanal isolates from the Baby Biome Study |
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Organism |
Raoultella planticola 4928STDY7071414 |
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Analysis Projects |
Raoultella planticola 4928STDY7071414 |
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Number of Analysis Projects (AP) |
1 |
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Number of Derived Analyis Projects (DAP) |
0
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SEQUENCING INFORMATION | |
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Sequencing Status
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Complete |
Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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GC Percent |
55.5
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Chromosome Count |
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Plasmid Count |
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ORGANISM NAME | |
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GOLD Organism ID |
Go0660149 |
Organism Name |
Raoultella planticola 4928STDY7071414
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Other names (alias, synonyms, short names, common names) |
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Organism Domain |
BACTERIAL
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Phylogeny |
PROTEOBACTERIA-GAMMA
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Genus |
Raoultella
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Genus Synonyms |
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Species |
Raoultella planticola
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Subspecies |
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Species Synonyms |
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Strain |
4928STDY7071414
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Strain Synonyms |
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Serovar/Cultivar |
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Culture Collection ID |
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Type Strain |
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Exemplar DOI |
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Exemplar Name |
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Taxon DOI |
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Biosafety Level |
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Organism Comments |
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Cultured |
Yes
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Culture Type |
Isolate
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Organism Type |
Natural
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Uncultured Type |
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Commercial Strain |
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Commercial Strain Comments |
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ORGANISM TAXONOMY
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NCBI Taxonomy ID |
575 |
NCBI Superkingdom |
Bacteria
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NCBI Kingdom |
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NCBI Phylum |
Pseudomonadota
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NCBI Class |
Gammaproteobacteria
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NCBI Order |
Enterobacterales
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NCBI Family |
Enterobacteriaceae
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NCBI Genus |
Raoultella
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NCBI Species |
Raoultella planticola
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ISOLATION CLASSIFICATION | |
Ecosystem |
Host-associated
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Ecosystem Category |
Mammals: Human
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Ecosystem Type |
Digestive system
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Ecosystem Subtype |
Large intestine
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Specific Ecosystem |
Fecal
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ORGANISM EXTERNAL REFERENCES | |
Strain Info ID |
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Genbank 16S ID |
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GENERAL PROPERTIES | |
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Oxygen Requirement |
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Cell Shape |
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Motility |
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Sporulation |
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Temperature Range |
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Salinity |
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pH |
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Cell Diameter |
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Cell Length |
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Color |
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Gram Staining |
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Biotic Relationships |
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Symbiotic Physical Interaction |
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Symbiotic Relationship |
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Symbiont Name |
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Symbiont Taxon ID |
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Cell Arrangements |
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Diseases |
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Known Habitats |
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Metabolisms |
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Phenotypes |
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Energy Sources |
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