PROJECT INFORMATION
GOLD Project ID
Gp0703704  
Project Name
Modestobacter sp. L9-4  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Microbial resistance to cellular damage under extreme conditions is an important part of understanding the limits of life; however, the mechanisms and genetics of resistance phenotypes are poorly understood. Extraterrestrial bodies such as Mars and Europa have extreme environmental conditions that include high UV or ionizing radiation, as well as low temperature, water availability, and atmospheric pressure. The closest analog to this combination of conditions on Earth is found in the high atmosphere. Accordingly, we have characterized bacteria isolated from samples collected in the stratosphere and demonstrated many of the isolates have extreme resistance to UVC and desiccation. The overall goal of this work is to characterize the molecular genetics and mechanisms of resistance to extreme stressors in Gram positive and negative isolates recovered from 21 to 26 km above Earth's surface.
NCBI BioProject Accession PRJNA734343
NCBI Locus Tag
KUM42  
NCBI BioSample Accession SAMN19814116
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By
Project Comments
  
Project Status
Complete and Published  
Project Relevance Environmental
Sequencing Center University of Florida, Gainesville (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Modestobacter sp. L9-4 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX13047323  (Link to NCBI )
Experiment Title Raw PacBio reads of Modestobacter sp. L9-4
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name L9-4
Library Layout SINGLE
Library Instrument SEQUEL_II
PROJECT COMPOSITION
Study Microbial resistance to cellular damage under extreme conditions
Organism Modestobacter sp. L9-4
Analysis Projects Modestobacter sp. L9-4
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31) Level 6: Finished
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio RS
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
74.6  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0659410
Organism Name
Modestobacter sp. L9-4  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOBACTERIA  
Genus
Modestobacter  
Genus Synonyms
  
Species
Modestobacter sp. L9-4  
Subspecies
  
Species Synonyms
  
Strain
L9-4  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 2851567
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinomycetota  
NCBI Class
Actinomycetes  
NCBI Order
Geodermatophilales  
NCBI Family
Geodermatophilaceae  
NCBI Genus
Modestobacter  
NCBI Species
Modestobacter sp. L9-4  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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