PROJECT INFORMATION
GOLD Project ID
Gp0703690  
Project Name
Psychrobacter immobilis A352  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name We measured growth under 24 different conditions for 85 accessions of Psychrobacter in tandem with whole genome sequencing and animal studies. We conducted comparative (phylo)genomics for these 85 Psychrobacter strains, as well as family-level comparative phylo-genomics. Our results indicate that growth at 37C is likely ancestral for the genus and is likely necessary for growth within mammalian bodies. Furthermore, Psychrobacter's closest relatives are pathobionts, and Psychrobacter likely evolved from a pathobiont ancestor.
NCBI BioProject Accession PRJEB40380
NCBI Locus Tag
JMX48  
NCBI BioSample Accession SAMEA7339744
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Max Planck Institute for Developmental Biology (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Psychrobacter immobilis A352 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX4573031  (Link to NCBI )
Experiment Title Illumina HiSeq 3000 paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id ERX4573032  (Link to NCBI )
Experiment Title Illumina HiSeq 3000 paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
 
SRA Experiment Id ERX4573030  (Link to NCBI )
Experiment Title Illumina HiSeq 3000 paired end sequencing
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_3000
PROJECT COMPOSITION
Study Psychrophilic species of the genus Psychrobacter are likely descendants of pathobionts
Organism Psychrobacter immobilis A352
Analysis Projects Psychrobacter immobilis A352
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
42.3  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0659396
Organism Name
Psychrobacter immobilis A352  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Psychrobacter  
Genus Synonyms
  
Species
Psychrobacter immobilis  
Subspecies
  
Species Synonyms
  
Strain
A352  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 498
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
Moraxellales  
NCBI Family
Moraxellaceae  
NCBI Genus
Psychrobacter  
NCBI Species
Psychrobacter immobilis  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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