PROJECT INFORMATION
GOLD Project ID
Gp0703353  
Project Name
Mycobacterium hodleri S5.20  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name The purpose of this project is to discover new antimicrobials from soil bacteria. First, we will maximize the biodiversity of bacteria entering our discovery pipeline by isolating soil microorganisms from unique and previously unmined ecological niches within the Canadian High Arctic using new technology to “domesticate” previously unculturable bacteria, namely the Cryo-iChip. Second, using an already-in-place innovative crowdsourcing approach, we will engage hundreds of undergraduate microbiology students to phenotypically screen the isolates for antimicrobial activity. Third, we will put in place a high quality analysis pipeline to validate and characterize the most promising leads at the genomic, phenotypic, and chemical level. The anticipated outputs of the program include new knowledge of extremophile biology, discovery of leads of high value to industrial partners, and the training of highly qualified personnel with transdisciplinary expertise.
NCBI BioProject Accession PRJNA496474
NCBI Locus Tag
EAH80  
NCBI BioSample Accession SAMN10244993
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Laval University (Canada)
Collaborating Institute
  
Funding Agency
  
Project Description
Mycobacterium hodleri S5.20 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Environmental microbiology: 21(10):3711-3727 gas fluxes.
PubMed: 31206918 DOI: 10.1111/1462-2920.14715
Other Publications
  
Ignored Publications
  
Unassigned Publications Frontiers in microbiology: Culture-Dependent Bioprospecting of Bacterial Isolates From the Canadian High Arctic Displaying Antibacterial Activity.
PubMed: 31447822 DOI: 10.3389/fmicb.2019.01836
SRA Experiment
  
PROJECT COMPOSITION
Study Roseomonas nepalensis S9.3B genome sequencing
Organism Mycobacterium hodleri S5.20
Analysis Projects Mycobacterium hodleri S5.20
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina MiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65.9  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0659063
Organism Name
Mycobacterium hodleri S5.20  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
ACTINOMYCETOTA  
Genus
Mycobacterium  
Genus Synonyms
  
Species
Mycobacterium hodleri  
Subspecies
  
Species Synonyms
  
Strain
S5.20  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 49897
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Actinomycetota  
NCBI Class
Actinomycetes  
NCBI Order
Mycobacteriales  
NCBI Family
Mycobacteriaceae  
NCBI Genus
Mycolicibacterium  
NCBI Species
Mycolicibacterium hodleri  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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