PROJECT INFORMATION
GOLD Project ID
Gp0703255  
Project Name
Pseudomonas oleovorans DSM 28630  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Microbiome research is hampered by the fact that many bacteria are still unknown and by the lack of publicly available isolates. There is thus a dire need to establish and utilize well-curated repositories of cultured bacteria from the intestine of mammalian hosts relevant for fundamental and clinical research. In this work, we expanded the mouse intestinal bacterial collection (www.dsmz.de/miBC) to reach a total of 207 strains all publicly available and taxonomically described.
NCBI BioProject Accession PRJNA856830
NCBI Locus Tag
NSA60  
NCBI BioSample Accession SAMN29593163
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center RWTH Aachen University (Germany)
Collaborating Institute
  
Funding Agency
  
Project Description
Pseudomonas oleovorans DSM 28630 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Mouse Intestinal Bacteria Collection
Organism Pseudomonas oleovorans DSM 28630
Analysis Projects Pseudomonas oleovorans DSM 28630
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
62.4  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0658971
Organism Name
Pseudomonas oleovorans DSM 28630  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-GAMMA  
Genus
Pseudomonas  
Genus Synonyms
  
Species
Pseudomonas oleovorans  
Subspecies
  
Species Synonyms
  
Strain
DSM 28630  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 28630  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 301
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Gammaproteobacteria  
NCBI Order
Pseudomonadales  
NCBI Family
Pseudomonadaceae  
NCBI Genus
Pseudomonas  
NCBI Species
Pseudomonas oleovorans  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Unclassified  
Ecosystem Subtype
Unclassified  
Specific Ecosystem
Unclassified  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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