PROJECT INFORMATION
GOLD Project ID
Gp0703198  
Project Name
Clostridium cocleatum DSM 1551  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Microbiome research is hampered by the fact that many bacteria are still unknown and by the lack of publicly available isolates. There is thus a dire need to establish and utilize well-curated repositories of cultured bacteria from the intestine of mammalian hosts relevant for fundamental and clinical research. In this work, we expanded the mouse intestinal bacterial collection (www.dsmz.de/miBC) to reach a total of 207 strains all publicly available and taxonomically described.
NCBI BioProject Accession PRJNA856830
NCBI Locus Tag
NSA15  
NCBI BioSample Accession SAMN29593113
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Medical
Sequencing Center RWTH Aachen University
Collaborating Institute
  
Funding Agency
  
Project Description
Clostridium cocleatum DSM 1551 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Mouse Intestinal Bacteria Collection
Organism Clostridium cocleatum DSM 1551
Analysis Projects Clostridium cocleatum DSM 1551
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
28.5  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0013488
Organism Name
Clostridium cocleatum DSM 1551  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
BACILLOTA  
Genus
Erysipelatoclostridium  
Genus Synonyms
  
Species
[Clostridium] cocleatum  
Subspecies
  
Species Synonyms
  
Strain
DSM 1551  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
DSM 1551  
Type Strain
Yes  
Exemplar DOI
10.1601/ex.3920  
Exemplar Name
Clostridium cocleatum  
Taxon DOI
10.1601/tx.3920  
Biosafety Level
1  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1121304
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Bacillota  
NCBI Class
Erysipelotrichia  
NCBI Order
Erysipelotrichales  
NCBI Family
Coprobacillaceae  
NCBI Genus
Thomasclavelia  
NCBI Species
Thomasclavelia cocleata  
ISOLATION CLASSIFICATION
Ecosystem
Host-associated  
Ecosystem Category
Mammals  
Ecosystem Type
Digestive system  
Ecosystem Subtype
Large intestine  
Specific Ecosystem
Cecum  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID Y18188
GENERAL PROPERTIES
Oxygen Requirement
Anaerobe  
Cell Shape
Rod-shaped  
Motility
Nonmotile  
Sporulation
Sporulating  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
Gram+  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements Singles
Pairs
Chains
Diseases
  
Known Habitats Host
Mouse
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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