Studies
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56,334 |
|
Biosamples
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196,988 |
|
Sequencing Projects
|
525,360 |
|
Analysis Projects
|
384,991 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0703154
|
|
Project Name
|
Methanolobus vulcani B1d
|
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Other Names
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|
Legacy GOLD ID
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|
| NCBI BioProject Name | The genome of Methanolobus vulcani B1d was sequenced using Illumina MiSeq technology due to its importance as a model organism for the study of glycine betaine dependent methanogenesis. Ml. vulcani B1d is a mesophilic, strictly methylotrophic methanogen that has the ability to use glycine betaine, trimethylamine, dimethylamine, monomethylamine, and methanol as growth substrates. The genome provides necessary information for analysis of the pathway of methanogenesis from glycine betaine, which can serve as a model for quaternary amine dependent methanogenesis, in general. |
|
NCBI BioProject Accession
|
PRJNA550984 |
|
NCBI Locus Tag
|
FKV42
|
|
NCBI BioSample Accession
|
SAMN12136587 |
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Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2023-01-20 |
| Last Modified By | Supratim Mukherjee on 2023-02-11 |
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
|
Environmental |
|
Sequencing Center
|
Miami University
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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Methanolobus vulcani B1d genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |
| Study |
Methanolobus vulcani B1d genome sequencing |
| Organism |
Methanolobus vulcani B1d |
| Analysis Projects |
Methanolobus vulcani B1d |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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|
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
|
Illumina MiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
40.2
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0658880 |
| Organism Name |
Methanolobus vulcani B1d
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
ARCHAEAL
|
| Phylogeny |
EURYARCHAEOTA
|
| Genus |
Methanolobus
|
| Genus Synonyms |
|
| Species |
Methanolobus vulcani
|
| Subspecies |
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| Species Synonyms |
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| Strain |
B1d
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
38026 |
| NCBI Superkingdom |
Archaea
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| NCBI Kingdom |
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| NCBI Phylum |
Euryarchaeota
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| NCBI Class |
Methanomicrobia
|
| NCBI Order |
Methanosarcinales
|
| NCBI Family |
Methanosarcinaceae
|
| NCBI Genus |
Methanolobus
|
| NCBI Species |
Methanolobus vulcani
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| Cell Diameter |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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