Studies
|
56,334 |
|
Biosamples
|
196,986 |
|
Sequencing Projects
|
525,358 |
|
Analysis Projects
|
385,008 |
| Organisms | 484,221 |
| PROJECT INFORMATION | |
|---|---|
|
GOLD Project ID
|
Gp0702451
|
|
Project Name
|
Spiroplasma endosymbiont of 'Nebria riversi' Nriv7
|
|
Other Names
|
|
|
Legacy GOLD ID
|
|
| NCBI BioProject Name | The purpose of this project was to develop a fully annotated genome for the alpine ground beetle, Nebria riversi (Coleoptera: Carabidae). Comparative genomics analysis of this species provides insight into the evolution of Carabidae, comprising more than 40,000 species, relative to other beetles, as well as genomic changes accompanying specialization in alpine habitats. |
|
NCBI BioProject Accession
|
PRJNA671697 |
|
NCBI Locus Tag
|
I5Q57
|
|
NCBI BioSample Accession
|
SAMN16792404 |
|
Source Sample ID
|
|
| PI | Unknown |
| Added By | JGI automated process on 2023-01-20 |
| Last Modified By | Supratim Mukherjee on 2023-02-11 |
| Project Comments |
|
|
Project Status
|
Complete and Published
|
|
Project Relevance
|
Evolution |
|
Sequencing Center
|
University of Wisconsin, Madison
(USA)
|
|
Collaborating Institute
|
|
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Funding Agency
|
|
|
Project Description
|
Spiroplasma endosymbiont of 'Nebria riversi' Nriv7 genome sequencing
|
| Is JGI Project |
No
|
|
Project Information Visibility
|
Public |
| PROJECT TYPE | |
|
Specimen
|
Organism |
|
Nucleic Acid
|
DNA |
|
Sequencing Strategy
|
Whole Genome Sequencing
|
| EXTERNAL PROJECT LINKS | |
|
JGI Data Utilization Status
|
|
|
JGI Award DOI
|
|
|
Genome Publications
|
Molecular ecology resources: 21(6):2145-2165 A high-quality carabid genome assembly provides insights into beetle genome evolution and cold adaptation. PubMed: 33938156 DOI: 10.1111/1755-0998.13409 |
|
Other Publications
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|
|
Ignored Publications
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Unassigned Publications
|
|
| SRA Experiment |
|
| PROJECT COMPOSITION | |
| Study |
Spiroplasma endosymbiont of 'Nebria riversi' Nriv7 genome sequencing |
| Organism |
Spiroplasma endosymbiont of 'Nebria riversi' Nriv7 |
| Analysis Projects |
Spiroplasma endosymbiont of 'Nebria riversi' Nriv7 |
| Number of Analysis Projects (AP) |
1 |
| Number of Derived Analyis Projects (DAP) |
0
|
| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
|
Finishing Goal
|
|
|
Contamination Screening Input
|
|
|
DNA Amplification Method
|
|
|
Single Cell Lysis Protocol
|
|
|
Single Cell Lysis Approach
|
|
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Sequencing Comments
|
|
|
DNA Amplification Kit
|
|
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Sequencing Technology
(MIGS-29)
|
PacBio Sequel |
|
Library Method
(MIGS-28)
|
|
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Library Layout
|
|
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Library Screening Method
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Number Of Reads
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Read Size
|
|
|
Vector
|
|
| GC Percent |
26.1
|
| Chromosome Count |
|
| Plasmid Count |
|
| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0658180 |
| Organism Name |
Spiroplasma endosymbiont of 'Nebria riversi' Nriv7
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
|
| Phylogeny |
MYCOPLASMATOTA
|
| Genus |
Spiroplasma
|
| Genus Synonyms |
|
| Species |
Spiroplasma endosymbiont of 'Nebria riversi'
|
| Subspecies |
|
| Species Synonyms |
|
| Strain |
Nriv7
|
| Strain Synonyms |
|
| Serovar/Cultivar |
|
| Culture Collection ID |
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| Type Strain |
|
| Exemplar DOI |
|
| Exemplar Name |
|
| Taxon DOI |
|
| Biosafety Level |
|
| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
|
| Commercial Strain |
|
| Commercial Strain Comments |
|
|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2792084 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Mycoplasmatota
|
| NCBI Class |
Mollicutes
|
| NCBI Order |
Entomoplasmatales
|
| NCBI Family |
Spiroplasmataceae
|
| NCBI Genus |
Spiroplasma
|
| NCBI Species |
Spiroplasma endosymbiont of 'Nebria riversi'
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Unclassified
|
| Ecosystem Type |
Unclassified
|
| Ecosystem Subtype |
Unclassified
|
| Specific Ecosystem |
Unclassified
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
|
| Genbank 16S ID |
|
| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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