PROJECT INFORMATION
GOLD Project ID
Gp0702442  
Project Name
Phormidium pseudopriestleyi FRX01  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name In Lake Fryxell, Antarctica, the benthic, filamentous cyanobacterium Phormidium pseudopriestleyi creates a 1-2 mm thick layer of 50 umol L-1 O2 in otherwise sulfidic water, demonstrating that is sustains oxygenic photosynthesis in the presence of sulfide. A sample of P. pseudopriestleyi was taken from 9.8 m depth in Lake Fryxell. The culture was stored at ambient indoor light at the lakeside laboratory for approximately ten days and then shipped to the Natural History Museum, where it was grown in BG11 liquid medium at 10C, and 24 h light. DNA was extracted from the enrichment culture using the MoBio Powerbio DNA extraction kit according to the manufacturer's instructions. The culture was sequenced on the Illumina HiSeq platform at the University of Michigan DNA Sequencing Core.
NCBI BioProject Accession PRJNA705694
NCBI Locus Tag
J0895  
NCBI BioSample Accession SAMN17478355
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center University of California, Davis (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Phormidium pseudopriestleyi FRX01 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Phormidium pseudopriestleyi FRX01 genome sequencing
Organism Phormidium pseudopriestleyi FRX01
Analysis Projects Phormidium pseudopriestleyi FRX01
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
47.4  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0658171
Organism Name
Phormidium pseudopriestleyi FRX01  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIOTA  
Genus
Phormidium  
Genus Synonyms
  
Species
Phormidium pseudopriestleyi  
Subspecies
  
Species Synonyms
  
Strain
FRX01  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1759528
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteriota  
NCBI Class
Cyanophyceae  
NCBI Order
Oscillatoriales  
NCBI Family
Oscillatoriaceae  
NCBI Genus
Phormidium  
NCBI Species
Phormidium pseudopriestleyi  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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