Studies
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56,335 |
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Biosamples
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196,965 |
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Sequencing Projects
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525,335 |
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Analysis Projects
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385,117 |
| Organisms | 484,219 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0702421
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Project Name
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Synechococcus sp. LA31
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | The goal of this project is to isolate multiple thermotypes of marine Synechococcus from natural communities. Natural seawater was enriched for photoautotrophs and split into multiple temperatures for two weeks. After the enrichment period Synechococcus was isolated from each temperature. Each isolate's thermal niche was measured through a series of lab experiments and sequenced. | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA566206 |
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NCBI Locus Tag
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KJJ24
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NCBI BioSample Accession
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SAMN19117154 |
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Source Sample ID
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| PI | Unknown | ||||||||||||||||||
| Added By | JGI automated process on 2023-01-20 | ||||||||||||||||||
| Last Modified By | Supratim Mukherjee on 2023-02-11 | ||||||||||||||||||
| Project Comments |
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Project Status
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Complete and Published
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Project Relevance
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Environmental |
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Sequencing Center
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University of Southern California
(USA)
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Collaborating Institute
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Funding Agency
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Project Description
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Synechococcus sp. LA31 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Synechococcus sp. LA31 genome sequencing |
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| Organism |
Synechococcus sp. LA31 |
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| Analysis Projects |
Synechococcus sp. LA31 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
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Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 6: Finished |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
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PacBio Sequel |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
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| GC Percent |
63.2
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0658150 |
| Organism Name |
Synechococcus sp. LA31
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| Other names (alias, synonyms, short names, common names) |
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| Organism Domain |
BACTERIAL
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| Phylogeny |
CYANOBACTERIOTA
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| Genus |
Synechococcus
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| Genus Synonyms |
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| Species |
Synechococcus sp. LA31
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| Subspecies |
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| Species Synonyms |
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| Strain |
LA31
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
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| Cultured |
Yes
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| Culture Type |
Isolate
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| Organism Type |
Natural
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| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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ORGANISM TAXONOMY
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| NCBI Taxonomy ID |
2741953 |
| NCBI Superkingdom |
Bacteria
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| NCBI Kingdom |
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| NCBI Phylum |
Cyanobacteriota
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| NCBI Class |
Cyanophyceae
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| NCBI Order |
Synechococcales
|
| NCBI Family |
Synechococcaceae
|
| NCBI Genus |
Synechococcus
|
| NCBI Species |
Synechococcus sp. LA31
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| ISOLATION CLASSIFICATION | |
| Ecosystem |
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| Ecosystem Category |
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| Ecosystem Type |
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| Ecosystem Subtype |
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| Specific Ecosystem |
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| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
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