PROJECT INFORMATION
GOLD Project ID
Gp0701409  
Project Name
Campylobacter concisus 2013-87946  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name In recent years, an increasing number of Campylobacter species have been associated with human gastrointestinal diseases including gastroenteritis, inflammatory bowel disease, and colorectal cancer. One such Campylobacter species is Campylobacter concisus, an oral commensal, which has historically been linked to gingivitis and periodontitis. This has offered the tantalising question of whether virulence potential of these strains changes through the gastrointestinal tract. Our aim was to generate robust genome sequence data for a number of clinical C. concisus strains and undertake a comprehensive pangenome assessment to identify properties that could explain C. concisus pathogenic potential.
NCBI BioProject Accession PRJEB22351
NCBI Locus Tag
F3H01  
NCBI BioSample Accession SAMEA5905272
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center University of Aberdeen (United Kingdom)
Collaborating Institute
  
Funding Agency
  
Project Description
Campylobacter concisus 2013-87946 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Comparative genomics of Campylobacter concisus: Analysis of clinical strains reveals genome diversity and pathogenic potential
Organism Campylobacter concisus 2013-87946
Analysis Projects Campylobacter concisus 2013-87946
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
38.5  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0657141
Organism Name
Campylobacter concisus 2013-87946  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-EPSILON  
Genus
Campylobacter  
Genus Synonyms
  
Species
Campylobacter concisus  
Subspecies
  
Species Synonyms
  
Strain
2013-87946  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 199
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Campylobacterota  
NCBI Class
Epsilonproteobacteria  
NCBI Order
Campylobacterales  
NCBI Family
Campylobacteraceae  
NCBI Genus
Campylobacter  
NCBI Species
Campylobacter concisus  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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