PROJECT INFORMATION
GOLD Project ID
Gp0701397  
Project Name
Vannielia litorea EBW16  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Microbial enrichment for DMSP-producing bacteria identified many different taxonomic groups of DMSP-producing bacteria with their intracellular DMSP concentrations ranging from 0.7 mM to 63.1 mM. These bacteria were likely producing DMSP in the original ECS environment since dsyBs and mmtNs found in some of these bacteria were present in the natural metagenomic data and representatives were able to produce DMSP in the seawater incubation experiment. This study supports the hypotheses that heterotrophic bacteria may have a significant role in marine DMSP production and that bacterial contribution to total DMSP increases with the depth, especially in the oxic sediment.
NCBI BioProject Accession PRJNA484519
NCBI Locus Tag
DYI42  
NCBI BioSample Accession SAMN09767125
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center Ocean University of China (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Vannielia litorea EBW16 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications Microorganisms: Bacterial Dimethylsulfoniopropionate Biosynthesis in the East China Sea.
PubMed: 33810191 DOI: 10.3390/microorganisms9030657
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
  
PROJECT COMPOSITION
Study Bacterial dimethylsulfoniopropionate biosynthesis in the East China Sea Raw sequence reads
Organism Vannielia litorea EBW16
Analysis Projects Vannielia litorea EBW16
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina HiSeq
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
65.3  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0657130
Organism Name
Vannielia litorea EBW16  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PSEUDOMONADOTA  
Genus
Vannielia  
Genus Synonyms
  
Species
Vannielia litorea  
Subspecies
  
Species Synonyms
  
Strain
EBW16  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1217970
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Alphaproteobacteria  
NCBI Order
Rhodobacterales  
NCBI Family
Paracoccaceae  
NCBI Genus
Vannielia  
NCBI Species
Vannielia litorea  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

  You are going to add the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  You are going to remove permissions for the following user to your project, biosample and study.

 

Contact Name/Email:

Do you want to continue?

 

 

  Changing the SP visibility will also change visibility on the following items:

 

Do you want to continue with this visibility change?

 

 

  Checking that this Sequencing Project can be made private:

 

Do you want to continue with this visibility change?

 

 

 

 

 

  Changing the SP Sequencing Strategy will also effect these items:

 

Do you want to continue with this Sequencing Strategy change?