PROJECT INFORMATION
GOLD Project ID
Gp0701333  
Project Name
Pseudanabaena biceps O153  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name This project aims to sequence a selection of cyanobacterial genomes.
NCBI BioProject Accession PRJNA615646
NCBI Locus Tag
HCU40  
NCBI BioSample Accession SAMN14463795
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance Environmental
Sequencing Center National Research Council, Canada Plant Biotechnology Institute (Canada)
Collaborating Institute
  
Funding Agency
  
Project Description
Pseudanabaena biceps O153 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX9295401  (Link to NCBI )
Experiment Title O153-pacbio-sequel
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection size fractionation
Library Name O153-pacbio-sequel
Library Layout SINGLE
Library Instrument SEQUEL
 
SRA Experiment Id SRX9295402  (Link to NCBI )
Experiment Title O153-Illumina
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection other
Library Name O153-Illumina
Library Layout PAIRED
Library Instrument ILLUMINA_MI_SEQ
PROJECT COMPOSITION
Study Pseudanabaena biceps O153 genome sequencing
Organism Pseudanabaena biceps O153
Analysis Projects Pseudanabaena biceps O153
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) PacBio Sequel
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
44.8  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0657069
Organism Name
Pseudanabaena biceps O153  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
CYANOBACTERIOTA  
Genus
Pseudanabaena  
Genus Synonyms
  
Species
Pseudanabaena biceps  
Subspecies
  
Species Synonyms
  
Strain
O153  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
  
Type Strain
  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 927669
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Cyanobacteriota  
NCBI Class
Cyanophyceae  
NCBI Order
Pseudanabaenales  
NCBI Family
Pseudanabaenaceae  
NCBI Genus
Pseudanabaena  
NCBI Species
Pseudanabaena biceps  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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