PROJECT INFORMATION
GOLD Project ID
Gp0701330  
Project Name
Ancylobacter defluvii VKM B-2789  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name The project aims to sequence and analyse Ancylobacter defluvii VKM B-2789 . Assembly sequence was gained by de novo methods, subsequently regarding annotation information was produced by our genomic analysis pipeline. Further study will be carried out with these data.
NCBI BioProject Accession PRJNA727940
NCBI Locus Tag
KHC24  
NCBI BioSample Accession SAMN19066013
Source Sample ID
PI Unknown
Added By JGI automated process on 2023-01-20
Last Modified By Supratim Mukherjee on 2023-02-11
Project Comments
  
Project Status
Permanent Draft  
Project Relevance
  
Sequencing Center Chinese Academy of Science, Institute of Microbiology (China)
Collaborating Institute
  
Funding Agency
  
Project Description
Ancylobacter defluvii VKM B-2789 genome sequencing  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Organism
Nucleic Acid DNA
Sequencing Strategy
Whole Genome Sequencing  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX10819028  (Link to NCBI )
Experiment Title raw sequence of Ancylobacter defluvii VKM B-2789
Exp Library Strategy WGS
Library Source GENOMIC
Library Selection RANDOM PCR
Library Name GCM10017653
Library Layout PAIRED
Library Instrument HI_SEQ_X_TEN
PROJECT COMPOSITION
Study Ancylobacter defluvii VKM B-2789 genome sequencing
Organism Ancylobacter defluvii VKM B-2789
Analysis Projects Ancylobacter defluvii VKM B-2789
Number of Analysis Projects (AP) 1
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status Complete
Sequencing Quality (MIGS-31) Level 2: High-Quality Draft
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29) Illumina
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
67.2  
Chromosome Count
  
Plasmid Count
  
ORGANISM NAME
GOLD Organism ID Go0618276
Organism Name
Ancylobacter defluvii VKM B-2789  
Other names (alias, synonyms, short names, common names)
  
Organism Domain
BACTERIAL  
Phylogeny
PROTEOBACTERIA-ALPHA  
Genus
Ancylobacter  
Genus Synonyms
  
Species
Ancylobacter defluvii  
Subspecies
  
Species Synonyms
  
Strain
VKM B-2789  
Strain Synonyms
  
Serovar/Cultivar
  
Culture Collection ID
VKM B-2789  
Type Strain
Yes  
Exemplar DOI
  
Exemplar Name
  
Taxon DOI
  
Biosafety Level
  
Organism Comments
  
Cultured
Yes  
Culture Type
Isolate  
Organism Type
Natural  
Uncultured Type
  
Commercial Strain
  
Commercial Strain Comments
  
ORGANISM TAXONOMY
NCBI Taxonomy ID 1282440
NCBI Superkingdom
Bacteria  
NCBI Kingdom
  
NCBI Phylum
Pseudomonadota  
NCBI Class
Alphaproteobacteria  
NCBI Order
Hyphomicrobiales  
NCBI Family
Xanthobacteraceae  
NCBI Genus
Ancylobacter  
NCBI Species
Ancylobacter defluvii  
ISOLATION CLASSIFICATION
Ecosystem
  
Ecosystem Category
  
Ecosystem Type
  
Ecosystem Subtype
  
Specific Ecosystem
  
ORGANISM EXTERNAL REFERENCES
Strain Info ID
Genbank 16S ID KC243678
GENERAL PROPERTIES
Oxygen Requirement
  
Cell Shape
  
Motility
  
Sporulation
  
Temperature Range
Mesophile  
Salinity
  
pH
  
Cell Diameter
  
Cell Length
  
Color
  
Gram Staining
  
Biotic Relationships
  
Symbiotic Physical Interaction
  
Symbiotic Relationship
  
Symbiont Name
  
Symbiont Taxon ID
  
Cell Arrangements
  
Diseases
  
Known Habitats
  
Metabolisms
  
Phenotypes
  
Energy Sources
  

 

 

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