Studies
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56,335 |
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Biosamples
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196,988 |
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Sequencing Projects
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525,361 |
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Analysis Projects
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384,993 |
| Organisms | 484,222 |
| PROJECT INFORMATION | |||||||||||||||||||
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GOLD Project ID
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Gp0700883
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Project Name
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Granulicella sp. dw_53
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Other Names
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Legacy GOLD ID
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| NCBI BioProject Name | Isolation of deadwood associated bacterium, natural temperate mixed forest, Picea abies, <5 years of decomposition | ||||||||||||||||||
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NCBI BioProject Accession
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PRJNA613883 |
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NCBI Locus Tag
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HB393
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NCBI BioSample Accession
|
SAMN14421283 |
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Source Sample ID
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| PI | Unknown | ||||||||||||||||||
| Added By | JGI automated process on 2023-01-20 | ||||||||||||||||||
| Last Modified By | Supratim Mukherjee on 2023-02-11 | ||||||||||||||||||
| Project Comments |
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Project Status
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Permanent Draft
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Project Relevance
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Sequencing Center
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Institute of Microbiology of the Czech Academy of Sciences
(Czechia)
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Collaborating Institute
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Funding Agency
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Project Description
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Granulicella sp. dw_53 genome sequencing
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| Is JGI Project |
No
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Project Information Visibility
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Public | ||||||||||||||||||
| PROJECT TYPE | |||||||||||||||||||
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Specimen
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Organism |
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Nucleic Acid
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DNA |
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Sequencing Strategy
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Whole Genome Sequencing
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| EXTERNAL PROJECT LINKS | |||||||||||||||||||
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JGI Data Utilization Status
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JGI Award DOI
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Genome Publications
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Frontiers in microbiology: Deadwood-Inhabiting Bacteria Show Adaptations to Changing Carbon and Nitrogen Availability During Decomposition. PubMed: 34220772 DOI: 10.3389/fmicb.2021.685303 |
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Other Publications
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Ignored Publications
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Unassigned Publications
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| SRA Experiment |
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| PROJECT COMPOSITION | |||||||||||||||||||
| Study |
Granulicella sp. dw_53 genome sequencing |
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| Organism |
Granulicella sp. dw_53 |
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| Analysis Projects |
Granulicella sp. dw_53 |
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| Number of Analysis Projects (AP) |
1 |
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| Number of Derived Analyis Projects (DAP) |
0
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| SEQUENCING INFORMATION | |
|---|---|
|
Sequencing Status
|
Complete |
| Sequencing Quality (MIGS-31) |
Level 2: High-Quality Draft |
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Finishing Goal
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Contamination Screening Input
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DNA Amplification Method
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Single Cell Lysis Protocol
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Single Cell Lysis Approach
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Sequencing Comments
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DNA Amplification Kit
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Sequencing Technology
(MIGS-29)
|
Illumina MiSeq |
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Library Method
(MIGS-28)
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Library Layout
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Library Screening Method
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Number Of Reads
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Read Size
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Vector
|
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| GC Percent |
57.6
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| Chromosome Count |
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| Plasmid Count |
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| ORGANISM NAME | |
|---|---|
| GOLD Organism ID |
Go0656625 |
| Organism Name |
Granulicella sp. dw_53
|
| Other names (alias, synonyms, short names, common names) |
|
| Organism Domain |
BACTERIAL
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| Phylogeny |
ACIDOBACTERIOTA
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| Genus |
Granulicella
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| Genus Synonyms |
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| Species |
Granulicella sp. dw_53
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| Subspecies |
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| Species Synonyms |
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| Strain |
dw_53
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| Strain Synonyms |
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| Serovar/Cultivar |
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| Culture Collection ID |
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| Type Strain |
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| Exemplar DOI |
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| Exemplar Name |
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| Taxon DOI |
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| Biosafety Level |
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| Organism Comments |
|
| Cultured |
Yes
|
| Culture Type |
Isolate
|
| Organism Type |
Natural
|
| Uncultured Type |
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| Commercial Strain |
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| Commercial Strain Comments |
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|
ORGANISM TAXONOMY
|
|
| NCBI Taxonomy ID |
2719792 |
| NCBI Superkingdom |
Bacteria
|
| NCBI Kingdom |
|
| NCBI Phylum |
Acidobacteriota
|
| NCBI Class |
Terriglobia
|
| NCBI Order |
Terriglobales
|
| NCBI Family |
Acidobacteriaceae
|
| NCBI Genus |
Granulicella
|
| NCBI Species |
Granulicella sp. dw_53
|
| ISOLATION CLASSIFICATION | |
| Ecosystem |
Host-associated
|
| Ecosystem Category |
Plants
|
| Ecosystem Type |
Phyllosphere
|
| Ecosystem Subtype |
Stem
|
| Specific Ecosystem |
Wood decay
|
| ORGANISM EXTERNAL REFERENCES | |
| Strain Info ID |
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| Genbank 16S ID |
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| GENERAL PROPERTIES | |
|---|---|
| Oxygen Requirement |
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| Cell Shape |
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| Motility |
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| Sporulation |
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| Temperature Range |
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| Salinity |
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| pH |
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| Cell Diameter |
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| Cell Length |
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| Color |
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| Gram Staining |
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| Biotic Relationships |
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| Symbiotic Physical Interaction |
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| Symbiotic Relationship |
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| Symbiont Name |
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| Symbiont Taxon ID |
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| Cell Arrangements |
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| Diseases |
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| Known Habitats |
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| Metabolisms |
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| Phenotypes |
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| Energy Sources |
|
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