PROJECT INFORMATION
GOLD Project ID
Gp0696463  
Project Name
Metatranscriptome of seawater microbial communities from Station PAPA in the Northeastern Pacific Ocean - FN176  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name NASA EXPORTS Epipelagic Bacterial Communities (Station PAPA and PAP Station)
NCBI BioProject Accession PRJNA785333
NCBI Locus Tag
  
NCBI BioSample Accession SAMN28553796
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-12-14
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance Environmental
Sequencing Center University of North Carolina, Chapel Hill (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Metatranscriptome of seawater microbial communities from Station PAPA in the Northeastern Pacific Ocean  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid RNA
Sequencing Strategy
Metatranscriptome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id SRX15418071  (Link to NCBI )
Experiment Title RNA-Seq of Ocean Station PAPA epipelagic bacterial community
Exp Library Strategy RNA_SEQ
Library Source METATRANSCRIPTOMIC
Library Selection RANDOM PCR
Library Name FN176
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_4000
PROJECT COMPOSITION
Study Seawater microbial communities from Station PAPA in the Northeastern Pacific Ocean
Biosample Seawater microbial communities from Station PAPA in the Northeastern Pacific Ocean - FN176
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Seawater microbial communities from Station PAPA in the Northeastern Pacific Ocean - FN176
Other Names (alias, synonyms, short names)
  
Sample Description
Seawater microbial communities from Station PAPA in the Northeastern Pacific Ocean  
SAMPLE TAXONOMY
NCBI Taxonomy ID 408172
GOLD CLASSIFICATION
Ecosystem
Environmental  
Ecosystem Category
Aquatic  
Ecosystem Type
Marine  
Ecosystem Subtype
Pelagic zone  
Specific Ecosystem
Epipelagic/Euphotic zone  
EXPERIMENT
Experimental Conditions
  

 

 

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