PROJECT INFORMATION
GOLD Project ID
Gp0696397  
Project Name
Negative control microbial communities from University of Southern California, Los Angeles, CA, USA - neg_reads  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Dimensions of biodiversity
NCBI BioProject Accession PRJEB12234
NCBI Locus Tag
  
NCBI BioSample Accession SAMEA104213055
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-12-14
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center University of Southern California (USA)
Collaborating Institute
  
Funding Agency
  
Project Description
Negative control microbial communities from University of Southern California, Los Angeles, CA, USA  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications
  
SRA Experiment
 
SRA Experiment Id ERX2154366  (Link to NCBI )
Experiment Title Illumina HiSeq 2500 paired end sequencing
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name unspecified
Library Layout PAIRED
Library Instrument ILLUMINA_HI_SEQ_2500
PROJECT COMPOSITION
Study Seawater microbial communities from the San Pedro Channel, California, USA
Biosample Negative control microbial communities from University of Southern California, Los Angeles, CA, USA - neg_reads
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Negative control microbial communities from University of Southern California, Los Angeles, CA, USA - neg_reads
Other Names (alias, synonyms, short names)
  
Sample Description
Negative control microbial communities from University of Southern California, Los Angeles, CA, USA  
SAMPLE TAXONOMY
NCBI Taxonomy ID 32644
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
Industrial production  
Ecosystem Type
Chemical products  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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