PROJECT INFORMATION
GOLD Project ID
Gp0696349  
Project Name
Wastewater microbial communities from WWTP in Tokyo, Japan - 22W-043 - 22W-043-meta  
Other Names
  
Legacy GOLD ID
  
NCBI BioProject Name Metagenomic survey and whole genome sequencing of antimicrobial resistant bacteria in Japanese wastewater treatment plant
NCBI BioProject Accession PRJDB6962
NCBI Locus Tag
  
NCBI BioSample Accession SAMD00494902
Source Sample ID
PI Unknown
Added By JGI automated process on 2022-12-14
Last Modified By
Project Comments
  
Project Status
incomplete  
Project Relevance
  
Sequencing Center National Institute of Infectious Diseases, Japan (Japan)
Collaborating Institute
  
Funding Agency
  
Project Description
Wastewater microbial communities from WWTP in Tokyo, Japan  
Is JGI Project
No  
Project Information Visibility Public
PROJECT TYPE
Specimen Biome
Nucleic Acid DNA
Sequencing Strategy
Metagenome  
EXTERNAL PROJECT LINKS
JGI Data Utilization Status
  
JGI Award DOI
Genome Publications
  
Other Publications
  
Ignored Publications
  
Unassigned Publications Environ Microbiol Rep: 11(4):589-597 Potential KPC-2 carbapenemase reservoir of environmental Aeromonas hydrophila and Aeromonas caviae isolates from the effluent of an urban wastewater treatment plant in Japan.
PubMed: 31106978 DOI: 10.1111/1758-2229.12772
Infect Drug Resist: GSH8M-2 isolated from the effluent of a wastewater treatment plant in Tokyo Bay.
PubMed: 31413601 DOI: 10.2147/IDR.S215273
Show more publications...

mSphere: -Positive Klebsiella pneumoniae Strain Isolated from the Effluent of an Urban Sewage Treatment Plant in Japan.
PubMed: 30232165 DOI: 10.1128/mSphere.00314-18
SRA Experiment
 
SRA Experiment Id DRX365814  (Link to NCBI )
Experiment Title NextSeq 500 paired end sequencing of SAMD00494902
Exp Library Strategy WGS
Library Source METAGENOMIC
Library Selection RANDOM
Library Name 22W-043-meta
Library Layout PAIRED
Library Instrument NEXT_SEQ_500
PROJECT COMPOSITION
Study Wastewater microbial communities from WWTP in Tokyo, Japan
Biosample Wastewater microbial communities from WWTP in Tokyo, Japan - 22W-043 - 22W-043-meta
Analysis Projects
  
Number of Analysis Projects (AP) 0
Number of Derived Analyis Projects (DAP)
0  
SEQUENCING INFORMATION
Sequencing Status In progress
Sequencing Quality (MIGS-31)
Finishing Goal
Contamination Screening Input
  
DNA Amplification Method
  
Sorting Technology
  
Single Cell Lysis Protocol
  
Single Cell Lysis Approach
  
Sequencing Comments
  
DNA Amplification Kit
  
Sequencing Technology (MIGS-29)
  
Library Method (MIGS-28)
  
Library Layout
  
Library Screening Method
  
Number Of Reads
  
Read Size
  
Vector
  
GC Percent
  
Chromosome Count
  
Plasmid Count
  
SAMPLE NAME
Sample Name Wastewater microbial communities from WWTP in Tokyo, Japan - 22W-043 - 22W-043-meta
Other Names (alias, synonyms, short names)
  
Sample Description
Wastewater microbial communities from WWTP in Tokyo, Japan  
SAMPLE TAXONOMY
NCBI Taxonomy ID 527639
GOLD CLASSIFICATION
Ecosystem
Engineered  
Ecosystem Category
WWTP  
Ecosystem Type
Wastewater  
Ecosystem Subtype
  
Specific Ecosystem
  

 

 

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